Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella sp. ANA-3 (ANA3)

Found 54 curated entries in PaperBLAST's database that match '2.3.1.9' as complete word(s).

These curated entries have 49 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Shewanella sp. ANA-3, or try another query

Shewana3_0023: 3-ketoacyl-CoA thiolase (RefSeq)
is similar to:
PaperBLAST

fadA / Q88L01: FadA (EC 2.3.1.16; EC 2.3.1.9) from Pseudomonas putida

67% id,
99% cov

AtoB / b2224: acetyl-CoA acetyltransferase (EC 2.3.1.16; EC 2.3.1.9) from Escherichia coli

44% id,
100% cov

THIL_ALLVD / P45369: Acetyl-CoA acetyltransferase; Acetoacetyl-CoA thiolase; Beta-ketothiolase; EC 2.3.1.9 from Allochromatium vinosum

44% id,
99% cov

More...

Shewana3_2771: acetyl-CoA acetyltransferases (RefSeq)
is similar to:
PaperBLAST

AO353_25685: acetyl-CoA:acetyl-CoA C-acetyltransferase / acetyl-CoA:propanoyl-CoA 2-C-acetyltransferase (EC 2.3.1.9; EC 2.3.1.16) from Pseudomonas fluorescens

62% id,
98% cov

AtoB / b2224: acetyl-CoA acetyltransferase (EC 2.3.1.16; EC 2.3.1.9) from Escherichia coli

53% id,
99% cov

Q8S4Y1: acetyl-CoA C-acetyltransferase (EC 2.3.1.9) from Arabidopsis thaliana

52% id,
99% cov

More...

Shewana3_1460: 3-ketoacyl-CoA thiolase (RefSeq)
is similar to:
PaperBLAST

THIL_SHIZO / P07097: Acetyl-CoA acetyltransferase; Acetoacetyl-CoA thiolase; Beta-ketothiolase; EC 2.3.1.9 from Shinella zoogloeoides

35% id,
98% cov

AtoB / b2224: acetyl-CoA acetyltransferase (EC 2.3.1.16; EC 2.3.1.9) from Escherichia coli

34% id,
99% cov

B1YB71: acetyl-CoA C-acetyltransferase (EC 2.3.1.9) from Pyrobaculum neutrophilum

33% id,
99% cov

More...

Shewana3_2557: 3-oxoacyl-[acyl-carrier-protein] synthase II (RefSeq)
is similar to:
PaperBLAST

B1YB71: acetyl-CoA C-acetyltransferase (EC 2.3.1.9) from Pyrobaculum neutrophilum

47% id,
11% cov

THIL_THIVI / P45363: Acetyl-CoA acetyltransferase; Acetoacetyl-CoA thiolase; Beta-ketothiolase; EC 2.3.1.9 from Thiocystis violacea

27% id,
20% cov

THLA_CLOAB / P45359: Acetyl-CoA acetyltransferase; Acetoacetyl-CoA thiolase; CaTHL; EC 2.3.1.9 from Clostridium acetobutylicum
P45359: acetyl-CoA C-acetyltransferase (EC 2.3.1.9) from Clostridium acetobutylicum

40% id,
10% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory