Curated BLAST for Genomes


Curated BLAST

Searching in Shewanella sp. ANA-3 (ANA3)

Found 22 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 14 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Shewanella sp. ANA-3, or try another query

Shewana3_3761: 2-isopropylmalate synthase (RefSeq)
is similar to:

D0VY45: homocitrate synthase (EC from Lotus japonicus

42% id,
95% cov

AKSA_METJA / Q57926: Homocitrate synthase AksA; (R)-homo(2)citrate synthase; (R)-homo(3)citrate synthase; EC; EC 2.3.3.- from Methanocaldococcus jannaschii

40% id,
84% cov

NIFV_AZOVI / P05342: Homocitrate synthase; EC from Azotobacter vinelandii
nifV / P05342: homocitrate synthase monomer (EC from Azotobacter vinelandii

36% id,
88% cov


Shewana3_3165: oxaloacetate decarboxylase (RefSeq)
is similar to:

A0A0S6UXF5: homocitrate synthase (EC from Bradyrhizobium sp.

24% id,
70% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory