Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella sp. ANA-3 (ANA3)

Found 150 curated entries in PaperBLAST's database that match '2.4.2.1'.

These curated entries have 101 distinct sequences.

Running ublast with E ≤ 0.01

Found 13 relevant proteins in Shewanella sp. ANA-3, or try another query

Shewana3_3776: orotate phosphoribosyltransferase (RefSeq)
is similar to:
PaperBLAST

PYRE_SALTY / P08870: Orotate phosphoribosyltransferase; OPRT; OPRTase; EC 2.4.2.10 from Salmonella typhimurium

81% id,
100% cov

PYRE_ECOLI / P0A7E3: Orotate phosphoribosyltransferase; OPRT; OPRTase; EC 2.4.2.10 from Escherichia coli
PyrE / b3642: orotate phosphoribosyltransferase (EC 2.4.2.10) from Escherichia coli
pyrE / P0A7E3: orotate phosphoribosyltransferase (EC 2.4.2.10) from Escherichia coli

80% id,
100% cov

PYRE_YEAST / P13298: Orotate phosphoribosyltransferase 1; OPRT 1; OPRTase 1; EC 2.4.2.10 from Saccharomyces cerevisiae
URA5 / P13298: orotate phosphoribosyltransferase (EC 2.4.2.10) from Saccharomyces cerevisiae
P13298: orotate phosphoribosyltransferase (EC 2.4.2.10) from Saccharomyces cerevisiae

48% id,
98% cov

More...

Shewana3_1483: amidophosphoribosyltransferase (RefSeq)
is similar to:
PaperBLAST

PUR1_ECOLI / P0AG16: Amidophosphoribosyltransferase; ATase; Glutamine phosphoribosylpyrophosphate amidotransferase; GPATase; EC 2.4.2.14 from Escherichia coli
Ade / b2312: amidophosphoribosyltransferase (EC 2.4.2.14) from Escherichia coli
purF / P0AG16: amidophosphoribosyltransferase (EC 2.4.2.14) from Escherichia coli

73% id,
100% cov

PUR1_YEAST / P04046: Amidophosphoribosyltransferase; ATase; Glutamine phosphoribosylpyrophosphate amidotransferase; EC 2.4.2.14 from Saccharomyces cerevisiae
ADE4 / P04046: phosphoribosylpyrophosphate amidotransferase (EC 2.4.2.14) from Saccharomyces cerevisiae

50% id,
99% cov

ade4 / RF|NP_594961.1: amidophosphoribosyltransferase Ade4; EC 2.4.2.14 from Schizosaccharomyces pombe

50% id,
98% cov

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Shewana3_1044: purine nucleoside phosphorylase (RefSeq)
is similar to:
PaperBLAST

DEOD_SALTY / Q8ZJV7: Purine nucleoside phosphorylase DeoD-type; PNP; EC 2.4.2.1 from Salmonella typhimurium

71% id,
98% cov

DEOD_ECOLI / P0ABP8: Purine nucleoside phosphorylase DeoD-type; PNP; EC 2.4.2.1 from Escherichia coli
Pup / b4384: purine nucleoside phosphorylase (EC 2.4.2.15; EC 2.4.2.1) from Escherichia coli
deoD / RF|NP_418801: purine nucleoside phosphorylase deoD-type; EC 2.4.2.1 from Escherichia coli
deoD / P0ABP8: purine nucleoside phosphorylase (EC 2.4.2.15; EC 2.4.2.1) from Escherichia coli
P0ABP8: purine-nucleoside phosphorylase (EC 2.4.2.1) from Escherichia coli

69% id,
98% cov

deoD: purine nucleoside phosphorylase; EC 2.4.2.1 from Bacillus anthracis

63% id,
98% cov

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Shewana3_1854: ATP phosphoribosyltransferase (RefSeq)
is similar to:
PaperBLAST

HIS1_ECOLI / P60757: ATP phosphoribosyltransferase; ATP-PRT; ATP-PRTase; EC 2.4.2.17 from Escherichia coli
HisG / b2019: ATP phosphoribosyltransferase (EC 2.4.2.17) from Escherichia coli
hisG / P60757: ATP phosphoribosyltransferase (EC 2.4.2.17) from Escherichia coli

69% id,
100% cov

HIS1_SALTY / P00499: ATP phosphoribosyltransferase; ATP-PRT; ATP-PRTase; EC 2.4.2.17 from Salmonella typhimurium

67% id,
100% cov

Q9PM78: ATP phosphoribosyltransferase (EC 2.4.2.17) from Campylobacter jejuni

64% id,
100% cov

More...

Shewana3_0422: nicotinate-nucleotide pyrophosphorylase [carboxylating] (RefSeq)
is similar to:
PaperBLAST

NADC_SALTY / P30012: Nicotinate-nucleotide pyrophosphorylase [carboxylating]; Quinolinate phosphoribosyltransferase [decarboxylating]; QAPRTase; EC 2.4.2.19 from Salmonella typhimurium

67% id,
93% cov

NadC / b0109: quinolinate phosphoribosyltransferase (decarboxylating) (EC 2.4.2.19) from Escherichia coli
nadC: nicotinate-nucleotide diphosphorylase, carboxylating; EC 2.4.2.19 from Escherichia coli
nadC / P30011: quinolinate phosphoribosyltransferase (decarboxylating) (EC 2.4.2.19) from Escherichia coli

64% id,
93% cov

NADC_MYCTU / P9WJJ7: Nicotinate-nucleotide pyrophosphorylase [carboxylating]; Quinolinate phosphoribosyltransferase [decarboxylating]; QAPRTase; EC 2.4.2.19 from Mycobacterium tuberculosis
P9WJJ7: nicotinate-nucleotide diphosphorylase (carboxylating) (EC 2.4.2.19) from Mycobacterium tuberculosis

42% id,
96% cov

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Shewana3_2503: purine nucleoside phosphorylase (RefSeq)
is similar to:
PaperBLAST

C8CPR9: purine-nucleoside phosphorylase (EC 2.4.2.1) from Pseudoalteromonas sp.

54% id,
99% cov

DEOD_ECOLI / P0ABP8: Purine nucleoside phosphorylase DeoD-type; PNP; EC 2.4.2.1 from Escherichia coli
Pup / b4384: purine nucleoside phosphorylase (EC 2.4.2.15; EC 2.4.2.1) from Escherichia coli
deoD / RF|NP_418801: purine nucleoside phosphorylase deoD-type; EC 2.4.2.1 from Escherichia coli
deoD / P0ABP8: purine nucleoside phosphorylase (EC 2.4.2.15; EC 2.4.2.1) from Escherichia coli
P0ABP8: purine-nucleoside phosphorylase (EC 2.4.2.1) from Escherichia coli

55% id,
97% cov

deoD: purine nucleoside phosphorylase; EC 2.4.2.1 from Bacillus anthracis

52% id,
100% cov

More...

Shewana3_3170: hypothetical protein (RefSeq)
is similar to:
PaperBLAST

PURNU_ECOLI / P33644: Purine nucleoside phosphorylase YfiH; Adenosine deaminase YfiH; Polyphenol oxidase YfiH; S-methyl-5'-thioadenosine phosphorylase YfiH; EC 2.4.2.1; EC 3.5.4.4; EC 1.10.3.-; EC 2.4.2.28 from Escherichia coli

53% id,
98% cov

PURNU_GEOS3 / P84138: Purine nucleoside phosphorylase YlmD; Adenosine deaminase YlmD; S-methyl-5'-thioadenosine phosphorylase YlmD; EC 2.4.2.1; EC 3.5.4.4; EC 2.4.2.28 from Geobacillus stearothermophilus

34% id,
89% cov

PURNU_BACTN / Q89ZI8: Purine nucleoside phosphorylase BT_4389; Adenosine deaminase BT_4389; S-methyl-5'-thioadenosine phosphorylase BT_4389; EC 2.4.2.1; EC 3.5.4.4; EC 2.4.2.28 from Bacteroides thetaiotaomicron

29% id,
92% cov

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Shewana3_1518: anthranilate phosphoribosyltransferase (RefSeq)
is similar to:
PaperBLAST

TRPD_THET8 / Q5SH88: Anthranilate phosphoribosyltransferase; EC 2.4.2.18 from Thermus thermophilus
TRPD_THETH / P83827: Anthranilate phosphoribosyltransferase; EC 2.4.2.18 from Thermus thermophilus

43% id,
96% cov

TRPD2_NOSS1 / Q8YXQ9: Anthranilate phosphoribosyltransferase 2; EC 2.4.2.18 from Nostoc sp.

41% id,
96% cov

TRPD_XANCP / Q8PD71: Anthranilate phosphoribosyltransferase; EC 2.4.2.18 from Xanthomonas campestris

41% id,
94% cov

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Shewana3_0263: hypothetical protein (RefSeq)
is similar to:
PaperBLAST

PPNP_ECOLI / P0C037: Pyrimidine/purine nucleoside phosphorylase; Adenosine phosphorylase; Cytidine phosphorylase; Guanosine phosphorylase; Inosine phosphorylase; Thymidine phosphorylase; Uridine phosphorylase; Xanthosine phosphorylase; EC 2.4.2.1; EC 2.4.2.2; EC 2.4.2.15; EC 2.4.2.4; EC 2.4.2.3 from Escherichia coli
PpnP / b0391: nucleoside phosphorylase PpnP (EC 2.4.2.15; EC 2.4.2.1; EC 2.4.2.2; EC 2.4.2.4; EC 2.4.2.3) from Escherichia coli
ppnP / P0C037: nucleoside phosphorylase PpnP (EC 2.4.2.15; EC 2.4.2.2; EC 2.4.2.1) from Escherichia coli

40% id,
98% cov

Shewana3_3680: uridine phosphorylase (RefSeq)
is similar to:
PaperBLAST

PNPH_SACS2 / P50389: Purine nucleoside phosphorylase; PNP; 5'-methylthioadenosine phosphorylase I; MTA phosphorylase I; MTAPI; EC 2.4.2.1; EC 2.4.2.28 from Saccharolobus solfataricus

34% id,
92% cov

Q72IR2: purine-nucleoside phosphorylase (EC 2.4.2.1) from Thermus thermophilus

30% id,
94% cov

deoD: purine nucleoside phosphorylase; EC 2.4.2.1 from Bacillus anthracis

35% id,
81% cov

More...

Shewana3_1519: anthranilate synthase component II (RefSeq)
is similar to:
PaperBLAST

TRPGD_ECOLI / P00904: Bifunctional protein TrpGD; EC 4.1.3.27; EC 2.4.2.18 from Escherichia coli
TrpD / b1263: anthranilate synthase subunit TrpD (EC 2.4.2.18; EC 4.1.3.27) from Escherichia coli
trpD / P00904: anthranilate synthase subunit TrpD (EC 2.4.2.18) from Escherichia coli

54% id,
36% cov

TRPGD_SALTY / P00905: Bifunctional protein TrpGD; EC 4.1.3.27; EC 2.4.2.18 from Salmonella typhimurium

54% id,
36% cov

Shewana3_0606: aminodeoxychorismate synthase, glutamine amidotransferase subunit (RefSeq)
is similar to:
PaperBLAST

TRPGD_ECOLI / P00904: Bifunctional protein TrpGD; EC 4.1.3.27; EC 2.4.2.18 from Escherichia coli
TrpD / b1263: anthranilate synthase subunit TrpD (EC 2.4.2.18; EC 4.1.3.27) from Escherichia coli
trpD / P00904: anthranilate synthase subunit TrpD (EC 2.4.2.18) from Escherichia coli

42% id,
35% cov

TRPGD_SALTY / P00905: Bifunctional protein TrpGD; EC 4.1.3.27; EC 2.4.2.18 from Salmonella typhimurium

41% id,
35% cov

Shewana3_4125: glucosamine--fructose-6-phosphate aminotransferase (RefSeq)
is similar to:
PaperBLAST

PPAT / Q06203: Amidophosphoribosyltransferase (EC 2.4.2.14) from Homo sapiens
Q06203: amidophosphoribosyltransferase (EC 2.4.2.14); pantetheine-phosphate adenylyltransferase (EC 2.7.7.3) from Homo sapiens

27% id,
51% cov

PUR1_BACSU / P00497: Amidophosphoribosyltransferase; ATase; Glutamine phosphoribosylpyrophosphate amidotransferase; GPATase; EC 2.4.2.14 from Bacillus subtilis

27% id,
47% cov

ASE2_ARATH / Q9STG9: Amidophosphoribosyltransferase 2, chloroplastic; AtATase2; AtPURF2; PRPP2; Glutamine phosphoribosylpyrophosphate amidotransferase 2; AtGPRAT2; Protein CHLOROPLAST IMPORT APPARATUS 1; Protein DIFFERENTIAL DEVELOPMENT OF VASCULAR ASSOCIATED CELLS; EC 2.4.2.14 from Arabidopsis thaliana
Q9STG9: amidophosphoribosyltransferase (EC 2.4.2.14) from Arabidopsis thaliana

31% id,
35% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 13 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory