Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella sp. ANA-3 (ANA3)

Found 11 curated entries in PaperBLAST's database that match '2.4.2.4' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Shewanella sp. ANA-3, or try another query

Shewana3_1042: thymidine phosphorylase (RefSeq)
is similar to:
PaperBLAST

Q7CP66: thymidine phosphorylase (EC 2.4.2.4) from Salmonella enterica

68% id,
100% cov

Ttg / b4382: thymidine phosphorylase (EC 2.4.2.2; EC 2.4.2.4; EC 2.4.2.3) from Escherichia coli
deoA / GB|AAC77335.1: thymidine phosphorylase; EC 2.4.2.4 from Escherichia coli
P07650: thymidine phosphorylase (EC 2.4.2.4) from Escherichia coli

68% id,
100% cov

TYPH_HUMAN / P19971: Thymidine phosphorylase; TP; Gliostatin; Platelet-derived endothelial cell growth factor; PD-ECGF; TdRPase; EC 2.4.2.4 from Homo sapiens
P19971: thymidine phosphorylase (EC 2.4.2.4) from Homo sapiens

37% id,
91% cov

More...

Shewana3_0534: glyceraldehyde-3-phosphate dehydrogenase (RefSeq)
is similar to:
PaperBLAST

TYPH_LACRH / P19663: Thymidine phosphorylase; TdRPase; EC 2.4.2.4 from Lacticaseibacillus rhamnosus

67% id,
91% cov

Shewana3_0263: hypothetical protein (RefSeq)
is similar to:
PaperBLAST

PpnP / b0391: nucleoside phosphorylase PpnP (EC 2.4.2.15; EC 2.4.2.1; EC 2.4.2.2; EC 2.4.2.4; EC 2.4.2.3) from Escherichia coli
P0C037: pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); thymidine phosphorylase (EC 2.4.2.4) from Escherichia coli

40% id,
98% cov

Shewana3_1518: anthranilate phosphoribosyltransferase (RefSeq)
is similar to:
PaperBLAST

TYPH_HUMAN / P19971: Thymidine phosphorylase; TP; Gliostatin; Platelet-derived endothelial cell growth factor; PD-ECGF; TdRPase; EC 2.4.2.4 from Homo sapiens
P19971: thymidine phosphorylase (EC 2.4.2.4) from Homo sapiens

27% id,
29% cov

Shewana3_1111: (p)ppGpp synthetase I, SpoT/RelA (RefSeq)
is similar to:
PaperBLAST

TYPH_HUMAN / P19971: Thymidine phosphorylase; TP; Gliostatin; Platelet-derived endothelial cell growth factor; PD-ECGF; TdRPase; EC 2.4.2.4 from Homo sapiens
P19971: thymidine phosphorylase (EC 2.4.2.4) from Homo sapiens

38% id,
15% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory