Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella sp. ANA-3 (ANA3)

Found 8 curated entries in PaperBLAST's database that match '2.5.1.73' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Shewanella sp. ANA-3, or try another query

Shewana3_2280: cysteine desulfurase (RefSeq)
is similar to:
PaperBLAST

A4FWT8: O-phospho-L-seryl-tRNA:Cys-tRNA synthase (EC 2.5.1.73) from Methanococcus maripaludis

30% id,
40% cov

SPSS_METJA / Q59072: O-phospho-L-seryl-tRNA:Cys-tRNA synthase; Sep-tRNA:Cys-tRNA synthase; SepCysS; EC 2.5.1.73 from Methanocaldococcus jannaschii
pscS / Q59072: Sep-tRNA:Cys-tRNA synthase monomer (EC 2.5.1.73) from Methanocaldococcus jannaschii
Q59072: O-phospho-L-seryl-tRNA:Cys-tRNA synthase (EC 2.5.1.73) from Methanocaldococcus jannaschii

26% id,
44% cov

Q12W26: O-phospho-L-seryl-tRNA:Cys-tRNA synthase (EC 2.5.1.73) from Methanococcoides burtonii

24% id,
40% cov

Shewana3_0295: aminotransferase, class V (RefSeq)
is similar to:
PaperBLAST

A4FWT8: O-phospho-L-seryl-tRNA:Cys-tRNA synthase (EC 2.5.1.73) from Methanococcus maripaludis

33% id,
18% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory