Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella sp. ANA-3 (ANA3)

Found 13 curated entries in PaperBLAST's database that match '2.6.1.48'.

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Shewanella sp. ANA-3, or try another query

Shewana3_3091: 4-aminobutyrate aminotransferase (RefSeq)
is similar to:		 PaperBLAST

Pf6N2E2_4013: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas fluorescens

 72% id,
100% cov

AO353_11510: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas fluorescens

 71% id,
100% cov

DAVT_PSEPK / Q88RB9: 5-aminovalerate aminotransferase DavT; 5-aminovalerate transaminase; Delta-aminovalerate aminotransferase; EC 2.6.1.48 from Pseudomonas putida
Q88RB9: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas putida

 71% id,
100% cov

More...

Shewana3_0610: bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein (RefSeq)
is similar to:		 PaperBLAST

DAVT_PSEAE / Q9I6M4: 5-aminovalerate aminotransferase DavT; 5-aminovalerate transaminase; Delta-aminovalerate aminotransferase; EC 2.6.1.48 from Pseudomonas aeruginosa
davT / Q9I6M4: 5-aminovalerate aminotransferase (EC 2.6.1.48) from Pseudomonas aeruginosa
Q9I6M4: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas aeruginosa

 39% id,
92% cov

Pf6N2E2_4013: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas fluorescens

 36% id,
95% cov

AO353_11510: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas fluorescens

 36% id,
93% cov

More...

Shewana3_3071: glutamate-1-semialdehyde aminotransferase (RefSeq)
is similar to:		 PaperBLAST

Pf6N2E2_4013: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas fluorescens

 34% id,
80% cov

DAVT_PSEAE / Q9I6M4: 5-aminovalerate aminotransferase DavT; 5-aminovalerate transaminase; Delta-aminovalerate aminotransferase; EC 2.6.1.48 from Pseudomonas aeruginosa
davT / Q9I6M4: 5-aminovalerate aminotransferase (EC 2.6.1.48) from Pseudomonas aeruginosa
Q9I6M4: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas aeruginosa

 33% id,
82% cov

AO353_11510: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas fluorescens

 32% id,
84% cov

More...

Shewana3_2520: aminotransferase (RefSeq)
is similar to:		 PaperBLAST

DAVT_PSEPK / Q88RB9: 5-aminovalerate aminotransferase DavT; 5-aminovalerate transaminase; Delta-aminovalerate aminotransferase; EC 2.6.1.48 from Pseudomonas putida
Q88RB9: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas putida

 29% id,
94% cov

AO353_11510: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas fluorescens

 29% id,
93% cov

Pf6N2E2_4013: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas fluorescens

 29% id,
92% cov

More...

Shewana3_3106: beta alanine--pyruvate transaminase (RefSeq)
is similar to:		 PaperBLAST

DAVT_PSEPK / Q88RB9: 5-aminovalerate aminotransferase DavT; 5-aminovalerate transaminase; Delta-aminovalerate aminotransferase; EC 2.6.1.48 from Pseudomonas putida
Q88RB9: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas putida

 28% id,
95% cov

A0A0U4XQS6: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19); 5-aminovalerate transaminase (EC 2.6.1.48) from Corynebacterium glutamicum

 31% id,
86% cov

GoaG / b1302: 4-aminobutyrate aminotransferase PuuE (EC 2.6.1.19; EC 2.6.1.48) from Escherichia coli
puuE / P50457: 4-aminobutyrate aminotransferase PuuE (EC 2.6.1.19; EC 2.6.1.48) from Escherichia coli

 27% id,
98% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory