Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella sp. ANA-3 (ANA3)

Found 71 curated entries in PaperBLAST's database that match '2.6.1.9'.

These curated entries have 47 distinct sequences.

Running ublast with E ≤ 0.01

Found 11 relevant proteins in Shewanella sp. ANA-3, or try another query

Shewana3_1852: histidinol phosphate aminotransferase (RefSeq)
is similar to:
PaperBLAST

HIS8_ECOLI / P06986: Histidinol-phosphate aminotransferase; Imidazole acetol-phosphate transaminase; HPAT; HspAT; EC 2.6.1.9 from Escherichia coli
HisC / b2021: histidinol-phosphate aminotransferase (EC 2.6.1.9) from Escherichia coli
hisC / P06986: histidinol-phosphate aminotransferase (EC 2.6.1.9) from Escherichia coli

46% id,
99% cov

HIS8_CALS4 / Q8R5Q4: Histidinol-phosphate aminotransferase; Histidine transaminase; Imidazole acetol-phosphate transaminase; EC 2.6.1.9; EC 2.6.1.38 from Caldanaerobacter subterraneus

33% id,
91% cov

P9WML7: histidinol-phosphate transaminase (EC 2.6.1.9) from Mycobacterium tuberculosis

33% id,
90% cov

More...

Shewana3_1303: polysaccharide biosynthesis protein (RefSeq)
is similar to:
PaperBLAST

PSEC_CAMJJ / Q5QKR7: UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine transaminase; Pseudaminic acid biosynthesis protein C; EC 2.6.1.92 from Campylobacter jejuni

37% id,
98% cov

PSEC_CAMJE / Q0P8W3: UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine transaminase; Pseudaminic acid biosynthesis protein C; EC 2.6.1.92 from Campylobacter jejuni

36% id,
98% cov

YfbE / b2253: UDP-4-amino-4-deoxy-L-arabinose aminotransferase (EC 2.6.1.92; EC 2.6.1.87) from Escherichia coli
arnB / P77690: UDP-4-amino-4-deoxy-L-arabinose aminotransferase (EC 2.6.1.92) from Escherichia coli

34% id,
97% cov

More...

Shewana3_3106: beta alanine--pyruvate transaminase (RefSeq)
is similar to:
PaperBLAST

GATP2_SOLLC / Q84P53: Gamma aminobutyrate transaminase 2; Gamma-aminobutyrate transaminase isozyme 2; LeGABA-TP2; SlGABA-T2; EC 2.6.1.96 from Solanum lycopersicum
GABA-TP2 / Q84P53: gamma aminobutyrate transaminase (EC 2.6.1.96) from Solanum lycopersicum
Q84P53: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19); 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Solanum lycopersicum

34% id,
94% cov

GATP4_ORYSJ / Q6ZH29: Probable gamma-aminobutyrate transaminase 4; OsGABA-T; EC 2.6.1.96 from Oryza sativa
Q6ZH29: 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Oryza sativa

34% id,
93% cov

GATP1_ORYSJ / Q7XN11: Gamma-aminobutyrate transaminase 1, mitochondrial; EC 2.6.1.96 from Oryza sativa
Q7XN11: 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Oryza sativa

36% id,
88% cov

More...

Shewana3_1908: DegT/DnrJ/EryC1/StrS aminotransferase (RefSeq)
is similar to:
PaperBLAST

PSEC_CAMJE / Q0P8W3: UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine transaminase; Pseudaminic acid biosynthesis protein C; EC 2.6.1.92 from Campylobacter jejuni

32% id,
81% cov

YfbE / b2253: UDP-4-amino-4-deoxy-L-arabinose aminotransferase (EC 2.6.1.92; EC 2.6.1.87) from Escherichia coli
arnB / P77690: UDP-4-amino-4-deoxy-L-arabinose aminotransferase (EC 2.6.1.92) from Escherichia coli

35% id,
69% cov

FDTB_ANETH / Q6T1W6: dTDP-3-amino-3,6-dideoxy-alpha-D-galactopyranose transaminase; dTDP-6-deoxy-D-xylo-hex-3-ulose aminase; EC 2.6.1.90 from Aneurinibacillus thermoaerophilus
fdtB / Q6T1W6: dTDP-3-amino-3,6-dideoxy-α-D-galactopyranose transaminase (EC 2.6.1.90) from Aneurinibacillus thermoaerophilus
Q6T1W6: dTDP-3-amino-3,6-dideoxy-alpha-D-galactopyranose transaminase (EC 2.6.1.90) from Aneurinibacillus thermoaerophilus

28% id,
87% cov

More...

Shewana3_0610: bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein (RefSeq)
is similar to:
PaperBLAST

GATP4_ORYSJ / Q6ZH29: Probable gamma-aminobutyrate transaminase 4; OsGABA-T; EC 2.6.1.96 from Oryza sativa
Q6ZH29: 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Oryza sativa

28% id,
92% cov

Q7XN12: 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Oryza sativa

28% id,
86% cov

GATP2_SOLLC / Q84P53: Gamma aminobutyrate transaminase 2; Gamma-aminobutyrate transaminase isozyme 2; LeGABA-TP2; SlGABA-T2; EC 2.6.1.96 from Solanum lycopersicum
GABA-TP2 / Q84P53: gamma aminobutyrate transaminase (EC 2.6.1.96) from Solanum lycopersicum
Q84P53: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19); 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Solanum lycopersicum

30% id,
80% cov

More...

Shewana3_2520: aminotransferase (RefSeq)
is similar to:
PaperBLAST

GATP2_SOLLC / Q84P53: Gamma aminobutyrate transaminase 2; Gamma-aminobutyrate transaminase isozyme 2; LeGABA-TP2; SlGABA-T2; EC 2.6.1.96 from Solanum lycopersicum
GABA-TP2 / Q84P53: gamma aminobutyrate transaminase (EC 2.6.1.96) from Solanum lycopersicum
Q84P53: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19); 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Solanum lycopersicum

31% id,
76% cov

Shewana3_3091: 4-aminobutyrate aminotransferase (RefSeq)
is similar to:
PaperBLAST

GATP2_SOLLC / Q84P53: Gamma aminobutyrate transaminase 2; Gamma-aminobutyrate transaminase isozyme 2; LeGABA-TP2; SlGABA-T2; EC 2.6.1.96 from Solanum lycopersicum
GABA-TP2 / Q84P53: gamma aminobutyrate transaminase (EC 2.6.1.96) from Solanum lycopersicum
Q84P53: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19); 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Solanum lycopersicum

25% id,
90% cov

GATP1_SOLLC / Q84P54: Gamma aminobutyrate transaminase 1, mitochondrial; Gamma-aminobutyrate transaminase isozyme 1; LeGABA-TP1; SlGABA-T1; EC 2.6.1.96 from Solanum lycopersicum
GABA-TP1 / Q84P54: gamma aminobutyrate transaminase (EC 2.6.1.96) from Solanum lycopersicum
Q84P54: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19); 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Solanum lycopersicum

28% id,
80% cov

GATP4_ORYSJ / Q6ZH29: Probable gamma-aminobutyrate transaminase 4; OsGABA-T; EC 2.6.1.96 from Oryza sativa
Q6ZH29: 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Oryza sativa

26% id,
84% cov

More...

Shewana3_3071: glutamate-1-semialdehyde aminotransferase (RefSeq)
is similar to:
PaperBLAST

GATP2_SOLLC / Q84P53: Gamma aminobutyrate transaminase 2; Gamma-aminobutyrate transaminase isozyme 2; LeGABA-TP2; SlGABA-T2; EC 2.6.1.96 from Solanum lycopersicum
GABA-TP2 / Q84P53: gamma aminobutyrate transaminase (EC 2.6.1.96) from Solanum lycopersicum
Q84P53: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19); 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Solanum lycopersicum

26% id,
77% cov

GATP1_ORYSJ / Q7XN11: Gamma-aminobutyrate transaminase 1, mitochondrial; EC 2.6.1.96 from Oryza sativa
Q7XN11: 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Oryza sativa

26% id,
73% cov

GATP3_SOLLC / Q84P52: Gamma aminobutyrate transaminase 3, chloroplastic; Gamma-aminobutyrate transaminase isozyme 3; LeGABA-TP3; SlGABA-T3; EC 2.6.1.96 from Solanum lycopersicum
Q84P52: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19); 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Solanum lycopersicum

26% id,
70% cov

More...

Shewana3_2145: aminotransferase AlaT (RefSeq)
is similar to:
PaperBLAST

HIS8_CALS4 / Q8R5Q4: Histidinol-phosphate aminotransferase; Histidine transaminase; Imidazole acetol-phosphate transaminase; EC 2.6.1.9; EC 2.6.1.38 from Caldanaerobacter subterraneus

23% id,
80% cov

AZOBR_RS20485: histidinol-phosphate aminotransferase [EC:2.6.1.9] from Azospirillum brasilense

25% id,
65% cov

Pf6N2E2_3251: histidinol-phosphate aminotransferase (EC 2.6.1.9) from Pseudomonas fluorescens

26% id,
61% cov

More...

Shewana3_2266: GntR family transcriptional regulator (RefSeq)
is similar to:
PaperBLAST

HIS8_CALS4 / Q8R5Q4: Histidinol-phosphate aminotransferase; Histidine transaminase; Imidazole acetol-phosphate transaminase; EC 2.6.1.9; EC 2.6.1.38 from Caldanaerobacter subterraneus

24% id,
78% cov

Shewana3_2164: queuosine biosynthesis protein QueC (RefSeq)
is similar to:
PaperBLAST

Q981C9: archaeosine synthase (EC 2.6.1.97) from Saccharolobus solfataricus

29% id,
48% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory