Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella sp. ANA-3 (ANA3)

Found 146 curated entries in PaperBLAST's database that match '2.7.1.15'.

These curated entries have 91 distinct sequences.

Running ublast with E ≤ 0.01

Found 10 relevant proteins in Shewanella sp. ANA-3, or try another query

Shewana3_3477: ribokinase (RefSeq)
is similar to:
PaperBLAST

A0A0H2UL04: ribokinase (EC 2.7.1.15) from Vibrio cholerae

51% id,
97% cov

RBSK_ECOLI / P0A9J6: Ribokinase; RK; EC 2.7.1.15 from Escherichia coli
RbsK / b3752: ribokinase (EC 2.7.1.15) from Escherichia coli
rbsK / P0A9J6: ribokinase (EC 2.7.1.15) from Escherichia coli

50% id,
96% cov

BWI76_RS00290: Ribokinase (EC 2.7.1.15) from Klebsiella michiganensis

49% id,
96% cov

More...

Shewana3_3276: adenosylcobinamide kinase (RefSeq)
is similar to:
PaperBLAST

cobP / P29931: CobP (EC 2.7.1.156; EC 2.7.7.62) from Sinorhizobium sp.

40% id,
95% cov

COBU_SALTY / Q05599: Bifunctional adenosylcobalamin biosynthesis protein CobU; Adenosylcobinamide kinase; Adenosylcobinamide-phosphate guanylyltransferase; EC 2.7.1.156; EC 2.7.7.62 from Salmonella typhimurium
cobU / Q05599: adenosylcobinamide-phosphate guanylyltransferase subunit (EC 2.7.1.156; EC 2.7.7.62) from Salmonella typhimurium

38% id,
100% cov

CobU / b1993: cobinamide-P guanylyltransferase / cobinamide kinase (EC 2.7.7.62; EC 2.7.1.156) from Escherichia coli
cobU / RF|NP_416497: bifunctional adenosylcobalamin biosynthesis protein CobU; EC 2.7.1.156; EC 2.7.7.62 from Escherichia coli

36% id,
100% cov

Shewana3_0069: ribokinase-like domain-containing protein (RefSeq)
is similar to:
PaperBLAST

AO356_00950: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

26% id,
90% cov

RBSK_ECOLI / P0A9J6: Ribokinase; RK; EC 2.7.1.15 from Escherichia coli
RbsK / b3752: ribokinase (EC 2.7.1.15) from Escherichia coli
rbsK / P0A9J6: ribokinase (EC 2.7.1.15) from Escherichia coli

24% id,
88% cov

RBSK_STAAC / A0A0H2WZY4: Ribokinase; RK; EC 2.7.1.15 from Staphylococcus aureus

23% id,
89% cov

More...

Shewana3_0849: bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (RefSeq)
is similar to:
PaperBLAST

RBSK_HUMAN / Q9H477: Ribokinase; RK; EC 2.7.1.15 from Homo sapiens
Q9H477: ribokinase (EC 2.7.1.15) from Homo sapiens

25% id,
92% cov

RBSK_YEAST / P25332: Ribokinase; RK; EC 2.7.1.15 from Saccharomyces cerevisiae

28% id,
27% cov

Shewana3_0268: site-specific DNA-methyltransferase (adenine-specific) (RefSeq)
is similar to:
PaperBLAST

SMc01103: Ribokinase (EC 2.7.1.15) from Sinorhizobium meliloti

23% id,
99% cov

RBSK_YEAST / P25332: Ribokinase; RK; EC 2.7.1.15 from Saccharomyces cerevisiae

29% id,
43% cov

RBSK_LEIMA / E9AD19: Ribokinase; RK; EC 2.7.1.15 from Leishmania major

29% id,
33% cov

More...

Shewana3_3578: galactokinase (RefSeq)
is similar to:
PaperBLAST

GALK2_HUMAN / Q01415: N-acetylgalactosamine kinase; GalNAc kinase; Galactokinase 2; EC 2.7.1.157 from Homo sapiens
Q01415: N-acetylgalactosamine kinase (EC 2.7.1.157) from Homo sapiens

29% id,
50% cov

Shewana3_0978: ribose-5-phosphate isomerase A (RefSeq)
is similar to:
PaperBLAST

RBSKI_FRUSL / P83534: Bifunctional ribokinase/ribose-5-phosphate isomerase A; EC 2.7.1.15; EC 5.3.1.6 from Fructilactobacillus sanfranciscensis

33% id,
42% cov

Shewana3_3087: RNA polymerase, sigma 70 subunit, RpoD (RefSeq)
is similar to:
PaperBLAST

IPMK_YEAST / P07250: Inositol polyphosphate multikinase; IPMK; Arginine metabolism regulation protein III; GLE1 synthetic lethal protein 3; Inositol polyphosphate kinase 2; EC 2.7.1.127; EC 2.7.1.151 from Saccharomyces cerevisiae
IPK2 / P07250: inositol polyphosphate multikinase (EC 2.7.1.127; EC 2.7.1.151) from Saccharomyces cerevisiae

19% id,
40% cov

Shewana3_1893: hypothetical protein (RefSeq)
is similar to:
PaperBLAST

IPPK_DROME / Q9W2Q7: Inositol-pentakisphosphate 2-kinase; Inositol-1,3,4,5,6-pentakisphosphate 2-kinase; Ins(1,3,4,5,6)P5 2-kinase; DmIpk1; InsP5 2-kinase; EC 2.7.1.158 from Drosophila melanogaster

25% id,
17% cov

Shewana3_3663: pilus (MSHA type) biogenesis protein MshL (RefSeq)
is similar to:
PaperBLAST

FAB1_YEAST / P34756: 1-phosphatidylinositol 3-phosphate 5-kinase FAB1; Phosphatidylinositol 3-phosphate 5-kinase; Formation of aploid and binucleate cells protein 1; Styryl dye vacuolar localization protein 7; Type III PIP kinase; PIPkin-III; EC 2.7.1.150 from Saccharomyces cerevisiae
FAB1 / P34756: 1-phosphatidylinositol-3-phosphate 5-kinase (EC 2.7.1.150) from Saccharomyces cerevisiae
P34756: 1-phosphatidylinositol-3-phosphate 5-kinase (EC 2.7.1.150) from Saccharomyces cerevisiae

39% id,
3% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory