Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella sp. ANA-3 (ANA3)

Found 41 curated entries in PaperBLAST's database that match '2.7.1.2' as complete word(s).

These curated entries have 33 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Shewanella sp. ANA-3, or try another query

Shewana3_2790: fructokinase (RefSeq)
is similar to:
PaperBLAST

Sama_2231: glucokinase (EC 2.7.1.2) from Shewanella amazonensis

79% id,
100% cov

Sama_1405: glucokinase (EC 2.7.1.2) from Shewanella amazonensis

66% id,
95% cov

GLK_BACSU / P54495: Glucokinase; Glucose kinase; EC 2.7.1.2 from Bacillus subtilis
P54495: glucokinase (EC 2.7.1.2) from Bacillus subtilis

31% id,
97% cov

More...

Shewana3_3578: galactokinase (RefSeq)
is similar to:
PaperBLAST

B1KDE7: glucokinase (EC 2.7.1.2) from Shewanella woodyi

68% id,
99% cov

B1KRG2: glucokinase (EC 2.7.1.2) from Shewanella woodyi

42% id,
99% cov

B1KD89: glucokinase (EC 2.7.1.2) from Shewanella woodyi

38% id,
90% cov

Shewana3_2698: N-acetylglucosamine kinase (RefSeq)
is similar to:
PaperBLAST

Sama_1405: glucokinase (EC 2.7.1.2) from Shewanella amazonensis

38% id,
95% cov

Sama_2231: glucokinase (EC 2.7.1.2) from Shewanella amazonensis

36% id,
98% cov

B1VZT1: glucokinase (EC 2.7.1.2) from Streptomyces griseus

30% id,
98% cov

More...

Shewana3_2985: ROK family protein (RefSeq)
is similar to:
PaperBLAST

glk: glucokinase; EC 2.7.1.2 from Bacillus megaterium
O31392: glucokinase (EC 2.7.1.2) from Priestia megaterium

35% id,
19% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory