Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella sp. ANA-3 (ANA3)

Found 25 curated entries in PaperBLAST's database that match '2.7.1.30'.

These curated entries have 20 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Shewanella sp. ANA-3, or try another query

Shewana3_3756: glycerol kinase (RefSeq)
is similar to:
PaperBLAST

GLPK_ECOLI / P0A6F3: Glycerol kinase; ATP:glycerol 3-phosphotransferase; Glycerokinase; GK; EC 2.7.1.30 from Escherichia coli
GlpK / b3926: glycerol kinase (EC 2.7.1.30) from Escherichia coli
glpK: glycerol kinase; EC 2.7.1.30 from Escherichia coli
glpK / P0A6F3: glycerol kinase (EC 2.7.1.30) from Escherichia coli

72% id,
98% cov

PS417_05575: Glycerol kinase (EC 2.7.1.30) from Pseudomonas simiae

70% id,
98% cov

GLPK_THETH / O66131: Glycerol kinase; ATP:glycerol 3-phosphotransferase; Glycerokinase; GK; EC 2.7.1.30 from Thermus thermophilus

60% id,
99% cov

More...

Shewana3_2064: ribulokinase (RefSeq)
is similar to:
PaperBLAST

GLPK_ENTFA / O34154: Glycerol kinase; ATP:glycerol 3-phosphotransferase; Glycerokinase; GK; EC 2.7.1.30 from Enterococcus faecalis

23% id,
96% cov

GLPK_THETH / O66131: Glycerol kinase; ATP:glycerol 3-phosphotransferase; Glycerokinase; GK; EC 2.7.1.30 from Thermus thermophilus

21% id,
98% cov

GLPK_ENTCA / O34153: Glycerol kinase; ATP:glycerol 3-phosphotransferase; Glycerokinase; GK; EC 2.7.1.30 from Enterococcus casseliflavus

21% id,
95% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory