Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella sp. ANA-3 (ANA3)

Found 46 curated entries in PaperBLAST's database that match '2.7.1.4' as complete word(s).

These curated entries have 39 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Shewanella sp. ANA-3, or try another query

Shewana3_0069: ribokinase-like domain-containing protein (RefSeq)
is similar to:
PaperBLAST

Shewana3_0069: Fructokinase (EC 2.7.1.4) from Shewanella sp.

100% id,
100% cov

N515DRAFT_1919: Fructokinase (EC 2.7.1.4) from Dyella japonica

36% id,
96% cov

Sama_0561: Fructokinase (EC 2.7.1.4) from Shewanella amazonensis

37% id,
91% cov

More...

Shewana3_2790: fructokinase (RefSeq)
is similar to:
PaperBLAST

MAK_ECOLI / P23917: Fructokinase; D-fructose kinase; Manno(fructo)kinase; EC 2.7.1.4 from Escherichia coli
Mak / b0394: fructokinase (EC 2.7.1.7; EC 2.7.1.4) from Escherichia coli
mak / P23917: fructokinase (EC 2.7.1.7; EC 2.7.1.4) from Escherichia coli

58% id,
100% cov

Shewana3_2698: N-acetylglucosamine kinase (RefSeq)
is similar to:
PaperBLAST

MAK_ECOLI / P23917: Fructokinase; D-fructose kinase; Manno(fructo)kinase; EC 2.7.1.4 from Escherichia coli
Mak / b0394: fructokinase (EC 2.7.1.7; EC 2.7.1.4) from Escherichia coli
mak / P23917: fructokinase (EC 2.7.1.7; EC 2.7.1.4) from Escherichia coli

37% id,
99% cov

Shewana3_3477: ribokinase (RefSeq)
is similar to:
PaperBLAST

Q42896: fructokinase (EC 2.7.1.4) from Solanum lycopersicum

27% id,
98% cov

Q42645: fructokinase (EC 2.7.1.4) from Beta vulgaris

28% id,
90% cov

scrK / Q9ZHJ6: fructokinase (EC 2.7.1.4) from Clostridium beijerinckii

27% id,
91% cov

More...

Shewana3_0268: site-specific DNA-methyltransferase (adenine-specific) (RefSeq)
is similar to:
PaperBLAST

scrK / GB|AAA08602.1: fructokinase; EC 2.7.1.4 from Salmonella enterica

26% id,
88% cov

Dshi_2797: Fructokinase (EC 2.7.1.4) from Dinoroseobacter shibae

31% id,
39% cov

SCRK_KLEPN / P26420: Fructokinase; EC 2.7.1.4 from Klebsiella pneumoniae
scrK / GB|CAA43322.1: fructokinase; EC 2.7.1.4 from Klebsiella pneumoniae
scrK / P26420: fructokinase (EC 2.7.1.4) from Klebsiella pneumoniae

36% id,
30% cov

More...

Shewana3_2985: ROK family protein (RefSeq)
is similar to:
PaperBLAST

MAK_ECOLI / P23917: Fructokinase; D-fructose kinase; Manno(fructo)kinase; EC 2.7.1.4 from Escherichia coli
Mak / b0394: fructokinase (EC 2.7.1.7; EC 2.7.1.4) from Escherichia coli
mak / P23917: fructokinase (EC 2.7.1.7; EC 2.7.1.4) from Escherichia coli

26% id,
51% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

4171120-4172040 (frame +1) on 248374
is similar to:
PaperBLAST

Q42645: fructokinase (EC 2.7.1.4) from Beta vulgaris
Also see hits to annotated proteins above

28% id,
95% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory