Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella sp. ANA-3 (ANA3)

Found 9 curated entries in PaperBLAST's database that match '2.7.1.8' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Shewanella sp. ANA-3, or try another query

Shewana3_3114: ATPase, BadF/BadG/BcrA/BcrD type (RefSeq)
is similar to:
PaperBLAST

GSPK_VIBCH / Q9KUA9: Glucosamine kinase GspK; GlcN kinase; EC 2.7.1.8 from Vibrio cholerae
gspK / Q9KUA9: glucosamine kinase (EC 2.7.1.8) from Vibrio cholerae

33% id,
95% cov

Shewana3_3477: ribokinase (RefSeq)
is similar to:
PaperBLAST

SM_b21217: glucosamine kinase (EC 2.7.1.8) from Sinorhizobium meliloti

26% id,
100% cov

Shewana3_0268: site-specific DNA-methyltransferase (adenine-specific) (RefSeq)
is similar to:
PaperBLAST

SM_b21217: glucosamine kinase (EC 2.7.1.8) from Sinorhizobium meliloti

32% id,
39% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory