Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella sp. ANA-3 (ANA3)

Found 6 curated entries in PaperBLAST's database that match '3.3.2.12' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Shewanella sp. ANA-3, or try another query

Shewana3_2768: enoyl-CoA hydratase (RefSeq)
is similar to:
PaperBLAST

H281DRAFT_04594: putative oxepin-CoA hydrolase (EC 3.3.2.12) from Paraburkholderia bryophila

34% id,
94% cov

paaZ1 / A0A2Z5MCI7: oxepin-CoA hydrolase (EC 3.3.2.12) from Paraburkholderia caledonica

33% id,
94% cov

Shewana3_0721: enoyl-CoA hydratase (RefSeq)
is similar to:
PaperBLAST

H281DRAFT_04594: putative oxepin-CoA hydrolase (EC 3.3.2.12) from Paraburkholderia bryophila

29% id,
94% cov

paaZ1 / A0A2Z5MCI7: oxepin-CoA hydrolase (EC 3.3.2.12) from Paraburkholderia caledonica

29% id,
94% cov

Shewana3_4123: naphthoate synthase (RefSeq)
is similar to:
PaperBLAST

H281DRAFT_04594: putative oxepin-CoA hydrolase (EC 3.3.2.12) from Paraburkholderia bryophila

26% id,
96% cov

paaZ1 / A0A2Z5MCI7: oxepin-CoA hydrolase (EC 3.3.2.12) from Paraburkholderia caledonica

26% id,
96% cov

Shewana3_1461: multifunctional fatty acid oxidation complex subunit alpha (RefSeq)
is similar to:
PaperBLAST

paaZ1 / A0A2Z5MCI7: oxepin-CoA hydrolase (EC 3.3.2.12) from Paraburkholderia caledonica

32% id,
74% cov

H281DRAFT_04594: putative oxepin-CoA hydrolase (EC 3.3.2.12) from Paraburkholderia bryophila

31% id,
74% cov

Shewana3_2767: enoyl-CoA hydratase/isomerase (RefSeq)
is similar to:
PaperBLAST

H281DRAFT_04594: putative oxepin-CoA hydrolase (EC 3.3.2.12) from Paraburkholderia bryophila

26% id,
85% cov

paaZ1 / A0A2Z5MCI7: oxepin-CoA hydrolase (EC 3.3.2.12) from Paraburkholderia caledonica

26% id,
85% cov

Shewana3_0819: bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase (RefSeq)
is similar to:
PaperBLAST

PAAZ_ECOLI / P77455: Bifunctional protein PaaZ; EC 3.3.2.12; EC 1.2.1.91 from Escherichia coli
YdbN / b1387: fused 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase and oxepin-CoA hydrolase (EC 3.3.2.12; EC 1.2.1.91; EC 4.2.1.55) from Escherichia coli
paaZ / P77455: fused 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase and oxepin-CoA hydrolase (EC 3.3.2.12; EC 1.2.1.91; EC 4.2.1.55) from Escherichia coli
P77455: oxepin-CoA hydrolase (EC 3.3.2.12) from Escherichia coli

23% id,
74% cov

Shewana3_3107: methylmalonate-semialdehyde dehydrogenase [acylating] (RefSeq)
is similar to:
PaperBLAST

PAAZ_ECOLI / P77455: Bifunctional protein PaaZ; EC 3.3.2.12; EC 1.2.1.91 from Escherichia coli
YdbN / b1387: fused 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase and oxepin-CoA hydrolase (EC 3.3.2.12; EC 1.2.1.91; EC 4.2.1.55) from Escherichia coli
paaZ / P77455: fused 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase and oxepin-CoA hydrolase (EC 3.3.2.12; EC 1.2.1.91; EC 4.2.1.55) from Escherichia coli
P77455: oxepin-CoA hydrolase (EC 3.3.2.12) from Escherichia coli

23% id,
58% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1694443-1696656 (frame +1) on 248374
is similar to:
PaperBLAST

paaZ1 / A0A2Z5MCI7: oxepin-CoA hydrolase (EC 3.3.2.12) from Paraburkholderia caledonica
Also see hits to annotated proteins above

31% id,
76% cov

H281DRAFT_04594: putative oxepin-CoA hydrolase (EC 3.3.2.12) from Paraburkholderia bryophila
Also see hits to annotated proteins above

30% id,
76% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory