Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella sp. ANA-3 (ANA3)

Found 8 curated entries in PaperBLAST's database that match '3.5.1.30'.

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Shewanella sp. ANA-3, or try another query

Shewana3_3642: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (RefSeq)
is similar to:
PaperBLAST

davA / Q88QV2: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas putida
Q88QV2: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas putida

34% id,
80% cov

PfGW456L13_1170: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas fluorescens

31% id,
84% cov

B3IVI7: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas putida

33% id,
80% cov

More...

Shewana3_1004: apolipoprotein N-acyltransferase (RefSeq)
is similar to:
PaperBLAST

PfGW456L13_1170: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas fluorescens

23% id,
56% cov

Pf1N1B4_2504: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas fluorescens

23% id,
56% cov

AO353_07425: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas fluorescens

22% id,
58% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

4374228-4375094 (frame -3) on 248374
is similar to:
PaperBLAST

PfGW456L13_1170: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas fluorescens
Also see hits to annotated proteins above

33% id,
89% cov

B3IVI7: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas putida
Also see hits to annotated proteins above

34% id,
85% cov

davA / Q88QV2: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas putida
Q88QV2: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas putida
Also see hits to annotated proteins above

34% id,
85% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory