Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella sp. ANA-3 (ANA3)

Found 182 curated entries in PaperBLAST's database that match '3.5.1.9'.

These curated entries have 136 distinct sequences.

Running ublast with E ≤ 0.01

Found 14 relevant proteins in Shewanella sp. ANA-3, or try another query

Shewana3_3366: methyl-accepting chemotaxis sensory transducer (RefSeq)
is similar to:
PaperBLAST

A9CPH6: acyl-homoserine-lactone acylase (EC 3.5.1.97) from Shewanella sp.

99% id,
100% cov

Q8EIC5: acyl-homoserine-lactone acylase (EC 3.5.1.97) from Shewanella oneidensis

96% id,
100% cov

PVDQ_PSEAE / Q9I194: Acyl-homoserine lactone acylase PvdQ; AHL acylase PvdQ; Acyl-HSL acylase PvdQ; EC 3.5.1.97 from Pseudomonas aeruginosa
Q9I194: acyl-homoserine-lactone acylase (EC 3.5.1.97) from Pseudomonas aeruginosa

34% id,
90% cov

More...

Shewana3_3099: peptidase C26 (RefSeq)
is similar to:
PaperBLAST

SO1267: Gamma-glutamyl-gamma-aminobutyrate hydrolase (EC 3.5.1.94) from Shewanella oneidensis

95% id,
100% cov

Sama_2645: Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) from Shewanella amazonensis

77% id,
98% cov

Pf6N2E2_4510: Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) from Pseudomonas fluorescens

64% id,
96% cov

More...

Shewana3_2132: succinylglutamate desuccinylase (RefSeq)
is similar to:
PaperBLAST

BPHYT_RS07720: Succinylglutamate desuccinylase (EC 3.5.1.96) from Burkholderia phytofirmans

39% id,
96% cov

PfGW456L13_1977: Succinylglutamate desuccinylase (EC 3.5.1.96) from Pseudomonas fluorescens

38% id,
97% cov

O50177: succinylglutamate desuccinylase (EC 3.5.1.96) from Pseudomonas aeruginosa

38% id,
98% cov

More...

Shewana3_2487: gamma-glutamyltransferase 1 (RefSeq)
is similar to:
PaperBLAST

PAC1_PSES3 / P15557: Acylase ACY 1 proenzyme; EC 3.5.1.93; EC 2.3.2.2; EC 3.4.19.13 from Pseudomonas sp.
P15557: glutaryl-7-aminocephalosporanic-acid acylase (EC 3.5.1.93) from Pseudomonas sp.

35% id,
96% cov

Shewana3_3514: gamma-glutamyltransferase 2 (RefSeq)
is similar to:
PaperBLAST

PAC1_PSES3 / P15557: Acylase ACY 1 proenzyme; EC 3.5.1.93; EC 2.3.2.2; EC 3.4.19.13 from Pseudomonas sp.
P15557: glutaryl-7-aminocephalosporanic-acid acylase (EC 3.5.1.93) from Pseudomonas sp.

35% id,
93% cov

Shewana3_1236: GMP synthase (RefSeq)
is similar to:
PaperBLAST

AO356_13140: Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) from Pseudomonas fluorescens

25% id,
91% cov

Sama_2645: Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) from Shewanella amazonensis

30% id,
65% cov

Pf6N2E2_4510: Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) from Pseudomonas fluorescens

25% id,
77% cov

More...

Shewana3_2634: histone deacetylase superfamily protein (RefSeq)
is similar to:
PaperBLAST

HDA11_HUMAN / Q96DB2: Histone deacetylase 11; HD11; EC 3.5.1.98 from Homo sapiens
Q96DB2: histone deacetylase (EC 3.5.1.98) from Homo sapiens

27% id,
84% cov

B2GUW3: histone deacetylase (EC 3.5.1.98) from Rattus norvegicus

27% id,
84% cov

Q70I53: amidase (EC 3.5.1.4); histone deacetylase (EC 3.5.1.98) from Alcaligenes sp.

29% id,
53% cov

More...

Shewana3_4036: amidohydrolase 3 (RefSeq)
is similar to:
PaperBLAST

NFDA_ARTPS / Q68AP4: N-substituted formamide deformylase; EC 3.5.1.91 from Arthrobacter pascens
nfdA / Q68AP4: N-substituted formamide deformylase subunit (EC 3.5.1.91) from Arthrobacter pascens
Q68AP4: N-substituted formamide deformylase (EC 3.5.1.91) from Arthrobacter pascens

34% id,
35% cov

Shewana3_2611: exonuclease SbcC, putative (RefSeq)
is similar to:
PaperBLAST

HDAC4_MOUSE / Q6NZM9: Histone deacetylase 4; HD4; EC 3.5.1.98 from Mus musculus

23% id,
28% cov

HDAC4_RAT / Q99P99: Histone deacetylase 4; HD4; EC 3.5.1.98 from Rattus norvegicus

22% id,
28% cov

Shewana3_2532: TolA family protein (RefSeq)
is similar to:
PaperBLAST

HDAC9_MOUSE / Q99N13: Histone deacetylase 9; HD9; Histone deacetylase 7B; HD7b; Histone deacetylase-related protein; MEF2-interacting transcription repressor MITR; EC 3.5.1.98 from Mus musculus

19% id,
22% cov

Shewana3_0019: amidohydrolase (RefSeq)
is similar to:
PaperBLAST

NFDA_ARTPS / Q68AP4: N-substituted formamide deformylase; EC 3.5.1.91 from Arthrobacter pascens
nfdA / Q68AP4: N-substituted formamide deformylase subunit (EC 3.5.1.91) from Arthrobacter pascens
Q68AP4: N-substituted formamide deformylase (EC 3.5.1.91) from Arthrobacter pascens

37% id,
11% cov

Shewana3_3087: RNA polymerase, sigma 70 subunit, RpoD (RefSeq)
is similar to:
PaperBLAST

HDAC5_HUMAN / Q9UQL6: Histone deacetylase 5; HD5; Antigen NY-CO-9; EC 3.5.1.98 from Homo sapiens

24% id,
16% cov

HDAC5_MOUSE / Q9Z2V6: Histone deacetylase 5; HD5; Histone deacetylase mHDA1; EC 3.5.1.98 from Mus musculus

24% id,
16% cov

Shewana3_3663: pilus (MSHA type) biogenesis protein MshL (RefSeq)
is similar to:
PaperBLAST

HDA11_DICDI / Q55FN5: Type-1 histone deacetylase 1; DdHdaA; EC 3.5.1.98 from Dictyostelium discoideum

70% id,
4% cov

HDA21_DICDI / Q54X15: Type-2 histone deacetylase 1; DdHdaD; EC 3.5.1.98 from Dictyostelium discoideum

31% id,
6% cov

HDA22_DICDI / Q54VQ7: Type-2 histone deacetylase 2; DdHdaC; EC 3.5.1.98 from Dictyostelium discoideum

37% id,
4% cov

Shewana3_1455: TPR repeat-containing protein (RefSeq)
is similar to:
PaperBLAST

HDA22_DICDI / Q54VQ7: Type-2 histone deacetylase 2; DdHdaC; EC 3.5.1.98 from Dictyostelium discoideum

20% id,
14% cov

HDA21_DICDI / Q54X15: Type-2 histone deacetylase 1; DdHdaD; EC 3.5.1.98 from Dictyostelium discoideum

21% id,
10% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 12 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

4400123-4401862 (frame -1) on 248374
is similar to:
PaperBLAST

HDA11_DICDI / Q55FN5: Type-1 histone deacetylase 1; DdHdaA; EC 3.5.1.98 from Dictyostelium discoideum
Also see hits to annotated proteins above

47% id,
12% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory