Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella sp. ANA-3 (ANA3)

Found 47 curated entries in PaperBLAST's database that match '4.1.1.17'.

These curated entries have 35 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Shewanella sp. ANA-3, or try another query

Shewana3_3871: ornithine decarboxylase (RefSeq)
is similar to:
PaperBLAST

A4Q8H0: ornithine decarboxylase (EC 4.1.1.17) from Serratia liquefaciens

76% id,
100% cov

SpeC / b2965: constitutive ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli
speC / P21169: constitutive ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli
P21169: ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli

69% id,
100% cov

DCOS_ECOLI / P24169: Inducible ornithine decarboxylase; EC 4.1.1.17 from Escherichia coli
SpeF / b0693: inducible ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli
speF / P24169: inducible ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli

70% id,
98% cov

More...

Shewana3_3682: ornithine decarboxylase (RefSeq)
is similar to:
PaperBLAST

DCOR1_DROME / P40807: Ornithine decarboxylase 1; ODC; EC 4.1.1.17 from Drosophila melanogaster

29% id,
91% cov

DCOR_CAEEL / P41931: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Caenorhabditis elegans

29% id,
88% cov

G4XUJ8: ornithine decarboxylase (EC 4.1.1.17) from Erythroxylum coca

28% id,
90% cov

More...

Shewana3_0390: diaminopimelate decarboxylase (RefSeq)
is similar to:
PaperBLAST

DCOR_TRYBB / P07805: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Trypanosoma brucei

24% id,
91% cov

W5Q1G7: ornithine decarboxylase (EC 4.1.1.17) from Ovis aries

26% id,
75% cov

DCOR_MOUSE / P00860: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Mus musculus
P00860: ornithine decarboxylase (EC 4.1.1.17) from Mus musculus

26% id,
75% cov

More...

Shewana3_1625: S-adenosylmethionine decarboxylase (RefSeq)
is similar to:
PaperBLAST

Q9U8D4: ornithine decarboxylase (EC 4.1.1.17); adenosylmethionine decarboxylase (EC 4.1.1.50) from Plasmodium falciparum

28% id,
8% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory