Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella sp. ANA-3 (ANA3)

Found 56 curated entries in PaperBLAST's database that match '4.1.1.19'.

These curated entries have 40 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Shewanella sp. ANA-3, or try another query

Shewana3_1624: arginine decarboxylase (RefSeq)
is similar to:		 PaperBLAST

Q7MK24: arginine decarboxylase (EC 4.1.1.19) from Vibrio vulnificus

 69% id,
99% cov

Q8ZHG8: arginine decarboxylase (EC 4.1.1.19) from Yersinia pestis

 57% id,
96% cov

SPEA_ECOLI / P21170: Biosynthetic arginine decarboxylase; ADC; EC 4.1.1.19 from Escherichia coli
SpeA / b2938: arginine decarboxylase, biosynthetic (EC 4.1.1.19) from Escherichia coli
speA / P21170: biosynthetic arginine decarboxylase (EC 4.1.1.19) from Escherichia coli
P21170: arginine decarboxylase (EC 4.1.1.19) from Escherichia coli

 57% id,
94% cov

More...

Shewana3_3871: ornithine decarboxylase (RefSeq)
is similar to:		 PaperBLAST

ADIA_ECOLI / P28629: Biodegradative arginine decarboxylase; ADC; EC 4.1.1.19 from Escherichia coli
AdiA / b4117: arginine decarboxylase, degradative (EC 4.1.1.19) from Escherichia coli
adiA / GI|145339: biodegradative arginine decarboxylase; EC 4.1.1.19 from Escherichia coli
adiA / P28629: arginine decarboxylase, degradative (EC 4.1.1.19) from Escherichia coli
P28629: arginine decarboxylase (EC 4.1.1.19) from Escherichia coli

 31% id,
89% cov

E8X9U7: arginine decarboxylase (EC 4.1.1.19) from Salmonella enterica

 30% id,
88% cov

Shewana3_3682: ornithine decarboxylase (RefSeq)
is similar to:		 PaperBLAST

ADC / Q96A70: arginine decarboxylase (EC 4.1.1.19) from Homo sapiens
Q96A70: arginine decarboxylase (EC 4.1.1.19) from Homo sapiens

 24% id,
78% cov

O25176: arginine decarboxylase (EC 4.1.1.19) from Helicobacter pylori

 23% id,
51% cov

Q0PAC6: arginine decarboxylase (EC 4.1.1.19) from Campylobacter jejuni

 26% id,
40% cov

Shewana3_0390: diaminopimelate decarboxylase (RefSeq)
is similar to:		 PaperBLAST

SPEA_ECOLI / P21170: Biosynthetic arginine decarboxylase; ADC; EC 4.1.1.19 from Escherichia coli
SpeA / b2938: arginine decarboxylase, biosynthetic (EC 4.1.1.19) from Escherichia coli
speA / P21170: biosynthetic arginine decarboxylase (EC 4.1.1.19) from Escherichia coli
P21170: arginine decarboxylase (EC 4.1.1.19) from Escherichia coli

 25% id,
50% cov

ADC / P49726: arginine decarboxylase (EC 4.1.1.19) from Solanum lycopersicum

 24% id,
52% cov

Q8YRP3: arginine decarboxylase (EC 4.1.1.19) from Nostoc sp.

 28% id,
45% cov

More...

Shewana3_1908: DegT/DnrJ/EryC1/StrS aminotransferase (RefSeq)
is similar to:		 PaperBLAST

Q5NT93: arginine decarboxylase (EC 4.1.1.19) from Selenomonas ruminantium

 21% id,
14% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

4646934-4649138 (frame +3) on 248374
is similar to:		 PaperBLAST

ADIA_ECOLI / P28629: Biodegradative arginine decarboxylase; ADC; EC 4.1.1.19 from Escherichia coli
AdiA / b4117: arginine decarboxylase, degradative (EC 4.1.1.19) from Escherichia coli
adiA / GI|145339: biodegradative arginine decarboxylase; EC 4.1.1.19 from Escherichia coli
adiA / P28629: arginine decarboxylase, degradative (EC 4.1.1.19) from Escherichia coli
P28629: arginine decarboxylase (EC 4.1.1.19) from Escherichia coli
Also see hits to annotated proteins above

 30% id,
95% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory