Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella sp. ANA-3 (ANA3)

Found 94 curated entries in PaperBLAST's database that match '4.1.99.1'.

These curated entries have 58 distinct sequences.

Running ublast with E ≤ 0.01

Found 10 relevant proteins in Shewanella sp. ANA-3, or try another query

Shewana3_1936: thiamine biosynthesis protein ThiC (RefSeq)
is similar to:
PaperBLAST

ThiC / b3994: phosphomethylpyrimidine synthase (EC 4.1.99.17) from Escherichia coli
thiC / P30136: phosphomethylpyrimidine synthase (EC 4.1.99.17) from Escherichia coli

76% id,
97% cov

THIC_SALTY / Q9L9I7: Phosphomethylpyrimidine synthase; Hydroxymethylpyrimidine phosphate synthase; HMP-P synthase; HMP-phosphate synthase; HMPP synthase; Thiamine biosynthesis protein ThiC; EC 4.1.99.17 from Salmonella typhimurium
Q9L9I7: phosphomethylpyrimidine synthase (EC 4.1.99.17) from Salmonella enterica

76% id,
95% cov

THIC_CAUVC / Q9A6Q5: Phosphomethylpyrimidine synthase; Hydroxymethylpyrimidine phosphate synthase; HMP-P synthase; HMP-phosphate synthase; HMPP synthase; Thiamine biosynthesis protein ThiC; EC 4.1.99.17 from Caulobacter vibrioides
thiC / Q9A6Q5: HMP-P synthase monomer (EC 4.1.99.17) from Caulobacter vibrioides
Q9A6Q5: phosphomethylpyrimidine synthase (EC 4.1.99.17) from Caulobacter vibrioides

62% id,
100% cov

More...

Shewana3_0134: 3,4-dihydroxy-2-butanone 4-phosphate synthase (RefSeq)
is similar to:
PaperBLAST

Q9KKP2: 3,4-dihydroxy-2-butanone-4-phosphate synthase (EC 4.1.99.12) from Vibrio cholerae

74% id,
96% cov

P66032: 3,4-dihydroxy-2-butanone-4-phosphate synthase (EC 4.1.99.12) from Salmonella enterica

71% id,
97% cov

RIBB_ECOLI / P0A7J0: 3,4-dihydroxy-2-butanone 4-phosphate synthase; DHBP synthase; EC 4.1.99.12 from Escherichia coli
LuxH / b3041: 3,4-dihydroxy-2-butanone-4-phosphate synthase (EC 4.1.99.12) from Escherichia coli
ribB / GB|AAN44559.1: 3,4-dihydroxy-2-butanone 4-phosphate synthase; EC 4.1.99.12 from Shigella flexneri
ribB / P0A7J0: 3,4-dihydroxy-2-butanone-4-phosphate synthase (EC 4.1.99.12) from Escherichia coli
P0A7J0: 3,4-dihydroxy-2-butanone-4-phosphate synthase (EC 4.1.99.12) from Escherichia coli

70% id,
97% cov

More...

Shewana3_1941: thiamine biosynthesis protein ThiH (RefSeq)
is similar to:
PaperBLAST

THIH_ECOLI / P30140: 2-iminoacetate synthase; Dehydroglycine synthase; Tyrosine lyase; EC 4.1.99.19 from Escherichia coli
ThiB / b3990: 2-iminoacetate synthase (EC 4.1.99.19) from Escherichia coli
thiH / P30140: 2-iminoacetate synthase (EC 4.1.99.19) from Escherichia coli
P30140: 2-iminoacetate synthase (EC 4.1.99.19) from Escherichia coli

54% id,
97% cov

THIH_SALTY / Q9S498: 2-iminoacetate synthase; Dehydroglycine synthase; Tyrosine lyase; EC 4.1.99.19 from Salmonella typhimurium
Q9S498: 2-iminoacetate synthase (EC 4.1.99.19) from Salmonella enterica

52% id,
98% cov

Shewana3_1098: GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase (RefSeq)
is similar to:
PaperBLAST

RIBB_ECOLI / P0A7J0: 3,4-dihydroxy-2-butanone 4-phosphate synthase; DHBP synthase; EC 4.1.99.12 from Escherichia coli
LuxH / b3041: 3,4-dihydroxy-2-butanone-4-phosphate synthase (EC 4.1.99.12) from Escherichia coli
ribB / GB|AAN44559.1: 3,4-dihydroxy-2-butanone 4-phosphate synthase; EC 4.1.99.12 from Shigella flexneri
ribB / P0A7J0: 3,4-dihydroxy-2-butanone-4-phosphate synthase (EC 4.1.99.12) from Escherichia coli
P0A7J0: 3,4-dihydroxy-2-butanone-4-phosphate synthase (EC 4.1.99.12) from Escherichia coli

53% id,
91% cov

P66032: 3,4-dihydroxy-2-butanone-4-phosphate synthase (EC 4.1.99.12) from Salmonella enterica

52% id,
91% cov

RIB3_CANAL / Q5A3V6: 3,4-dihydroxy-2-butanone 4-phosphate synthase; DHBP synthase; EC 4.1.99.12 from Candida albicans
RIB3 / PDB|2RIS_A: 3,4-dihydroxy-2-butanone 4-phosphate synthase; EC 4.1.99.12 from Candida albicans
Q5A3V6: 3,4-dihydroxy-2-butanone-4-phosphate synthase (EC 4.1.99.12) from Candida albicans

49% id,
95% cov

More...

Shewana3_3704: deoxyribodipyrimidine photolyase-related protein (RefSeq)
is similar to:
PaperBLAST

Q3IXP1: (6-4)DNA photolyase (EC 4.1.99.13) from Rhodobacter sphaeroides

44% id,
98% cov

PHRB_AGRFC / A9CH39: (6-4) photolyase; (6-4)DNA photolyase; DNA photolyase PhrB; Photoreactivating enzyme PhrB; EC 4.1.99.13 from Agrobacterium fabrum
A9CH39: (6-4)DNA photolyase (EC 4.1.99.13) from Agrobacterium tumefaciens

41% id,
99% cov

Shewana3_0708: thiamine biosynthesis protein ThiH (RefSeq)
is similar to:
PaperBLAST

THIH_ECOLI / P30140: 2-iminoacetate synthase; Dehydroglycine synthase; Tyrosine lyase; EC 4.1.99.19 from Escherichia coli
ThiB / b3990: 2-iminoacetate synthase (EC 4.1.99.19) from Escherichia coli
thiH / P30140: 2-iminoacetate synthase (EC 4.1.99.19) from Escherichia coli
P30140: 2-iminoacetate synthase (EC 4.1.99.19) from Escherichia coli

31% id,
93% cov

THIH_SALTY / Q9S498: 2-iminoacetate synthase; Dehydroglycine synthase; Tyrosine lyase; EC 4.1.99.19 from Salmonella typhimurium
Q9S498: 2-iminoacetate synthase (EC 4.1.99.19) from Salmonella enterica

33% id,
87% cov

Shewana3_1166: deoxyribodipyrimidine photo-lyase type I (RefSeq)
is similar to:
PaperBLAST

Q8SXK5: (6-4)DNA photolyase (EC 4.1.99.13) from Drosophila melanogaster

28% id,
92% cov

Q0E8P0: (6-4)DNA photolyase (EC 4.1.99.13) from Drosophila melanogaster

28% id,
92% cov

UVR3_ARATH / O48652: (6-4)DNA photolyase; Protein UV repair defective 3; EC 4.1.99.13 from Arabidopsis thaliana
UVR3 / O48652: (6-4)DNA photolyase (EC 4.1.99.13) from Arabidopsis thaliana
O48652: (6-4)DNA photolyase (EC 4.1.99.13) from Arabidopsis thaliana

29% id,
88% cov

More...

Shewana3_2600: GTP cyclohydrolase II (RefSeq)
is similar to:
PaperBLAST

A5U2B7: 3,4-dihydroxy-2-butanone-4-phosphate synthase (EC 4.1.99.12) from Mycobacterium tuberculosis

46% id,
48% cov

RIBA1_ARATH / P47924: Bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic; AtRIBA1; EC 4.1.99.12; EC 3.5.4.25 from Arabidopsis thaliana
RIBBA / P47924: chloroplastic riboflavin biosynthesis protein ribBA (EC 3.5.4.25; EC 4.1.99.12) from Arabidopsis thaliana
P47924: 3,4-dihydroxy-2-butanone-4-phosphate synthase (EC 4.1.99.12) from Arabidopsis thaliana

46% id,
35% cov

RIBA2_ARATH / Q6NLQ7: Monofunctional riboflavin biosynthesis protein RIBA 2, chloroplastic; EC 4.1.99.12 from Arabidopsis thaliana
Q6NLQ7: 3,4-dihydroxy-2-butanone-4-phosphate synthase (EC 4.1.99.12) from Arabidopsis thaliana

35% id,
34% cov

Shewana3_1555: formate acetyltransferase (RefSeq)
is similar to:
PaperBLAST

Q39VF1: benzylsuccinate synthase (EC 4.1.99.11) from Geobacter metallireducens

22% id,
64% cov

I6LHT8: benzylsuccinate synthase (EC 4.1.99.11) from Azoarcus sp.

35% id,
6% cov

bssA / Q8VPT7: benzylsuccinate synthase α subunit (EC 4.1.99.11) from Aromatoleum toluolicum
Q8VPT7: benzylsuccinate synthase (EC 4.1.99.11) from Azoarcus sp.

35% id,
6% cov

More...

Shewana3_3106: beta alanine--pyruvate transaminase (RefSeq)
is similar to:
PaperBLAST

P31015: tryptophanase (EC 4.1.99.1) from Symbiobacterium thermophilum

34% id,
16% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory