Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella sp. ANA-3 (ANA3)

Found 3 curated entries in PaperBLAST's database that match '4.2.1.100' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Shewanella sp. ANA-3, or try another query

Shewana3_2768: enoyl-CoA hydratase (RefSeq)
is similar to:
PaperBLAST

D3RXI0: cyclohexa-1,5-dienecarbonyl-CoA hydratase (EC 4.2.1.100) from Ferroglobus placidus

28% id,
100% cov

O87873: cyclohexa-1,5-dienecarbonyl-CoA hydratase (EC 4.2.1.100) from Thauera aromatica

28% id,
97% cov

Shewana3_4123: naphthoate synthase (RefSeq)
is similar to:
PaperBLAST

D3RXI0: cyclohexa-1,5-dienecarbonyl-CoA hydratase (EC 4.2.1.100) from Ferroglobus placidus

27% id,
96% cov

bamR / Q2LXU6: cyclohexa-1,5-dienecarbonyl-CoA hydratase monomer (EC 4.2.1.100) from Syntrophus aciditrophicus

33% id,
66% cov

Shewana3_1461: multifunctional fatty acid oxidation complex subunit alpha (RefSeq)
is similar to:
PaperBLAST

bamR / Q2LXU6: cyclohexa-1,5-dienecarbonyl-CoA hydratase monomer (EC 4.2.1.100) from Syntrophus aciditrophicus

27% id,
96% cov

D3RXI0: cyclohexa-1,5-dienecarbonyl-CoA hydratase (EC 4.2.1.100) from Ferroglobus placidus

31% id,
63% cov

O87873: cyclohexa-1,5-dienecarbonyl-CoA hydratase (EC 4.2.1.100) from Thauera aromatica

29% id,
66% cov

Shewana3_0024: multifunctional fatty acid oxidation complex subunit alpha (RefSeq)
is similar to:
PaperBLAST

D3RXI0: cyclohexa-1,5-dienecarbonyl-CoA hydratase (EC 4.2.1.100) from Ferroglobus placidus

32% id,
79% cov

Shewana3_0572: enoyl-CoA hydratase (RefSeq)
is similar to:
PaperBLAST

O87873: cyclohexa-1,5-dienecarbonyl-CoA hydratase (EC 4.2.1.100) from Thauera aromatica

26% id,
93% cov

Shewana3_1670: methylglutaconyl-CoA hydratase (RefSeq)
is similar to:
PaperBLAST

bamR / Q2LXU6: cyclohexa-1,5-dienecarbonyl-CoA hydratase monomer (EC 4.2.1.100) from Syntrophus aciditrophicus

23% id,
86% cov

Shewana3_2767: enoyl-CoA hydratase/isomerase (RefSeq)
is similar to:
PaperBLAST

D3RXI0: cyclohexa-1,5-dienecarbonyl-CoA hydratase (EC 4.2.1.100) from Ferroglobus placidus

23% id,
62% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory