Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella sp. ANA-3 (ANA3)

Found 14 curated entries in PaperBLAST's database that match '4.2.1.25' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Shewanella sp. ANA-3, or try another query

Shewana3_2070: dihydroxy-acid dehydratase (RefSeq)
is similar to:
PaperBLAST

Shewana3_2070: L-arabonate dehydratase (EC 4.2.1.25) from Shewanella sp.

100% id,
100% cov

AO356_24585: L-arabonate dehydratase (EC 4.2.1.25) from Pseudomonas fluorescens

74% id,
100% cov

PS417_11000: L-arabonate dehydratase (EC 4.2.1.25) from Pseudomonas simiae

74% id,
100% cov

More...

Shewana3_2149: phosphogluconate dehydratase (RefSeq)
is similar to:
PaperBLAST

BPHYT_RS19730: L-arabonate dehydratase (EC 4.2.1.25) from Burkholderia phytofirmans

32% id,
84% cov

ARAD_RHILW / B5ZZ34: L-arabinonate dehydratase; ArDHT; D-fuconate dehydratase; Galactonate dehydratase; L-arabonate dehydratase; EC 4.2.1.25; EC 4.2.1.67; EC 4.2.1.6 from Rhizobium leguminosarum
I9XDU6: L-Arabinonate dehydratase (EC 4.2.1.25) from Rhizobium leguminosarum

30% id,
89% cov

Shewana3_2070: L-arabonate dehydratase (EC 4.2.1.25) from Shewanella sp.

31% id,
82% cov

More...

Shewana3_0358: dihydroxy-acid dehydratase (RefSeq)
is similar to:
PaperBLAST

SM_b20890: L-arabonate dehydratase (EC 4.2.1.25) from Sinorhizobium meliloti

35% id,
61% cov

SM_b20890: L-arabonate dehydratase (EC 4.2.1.25) from Sinorhizobium meliloti

30% id,
66% cov

Pf6N2E2_609: L-arabonate dehydratase (EC 4.2.1.25) from Pseudomonas fluorescens

31% id,
64% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory