Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella sp. ANA-3 (ANA3)

Found 43 curated entries in PaperBLAST's database that match '5.3.1.4' as complete word(s).

These curated entries have 37 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Shewanella sp. ANA-3, or try another query

Shewana3_2066: L-arabinose isomerase (RefSeq)
is similar to:		 PaperBLAST

Shewana3_2066: L-arabinose isomerase (EC 5.3.1.4) from Shewanella sp.

 100% id,
100% cov

CA265_RS08615: L-arabinose isomerase (EC 5.3.1.4) from Pedobacter sp.

 56% id,
100% cov

P58540: L-arabinose isomerase (EC 5.3.1.4) from Yersinia pestis

 55% id,
100% cov

More...

Shewana3_0677: KpsF/GutQ family protein (RefSeq)
is similar to:		 PaperBLAST

Q3IG38: L-arabinose isomerase (EC 5.3.1.4) from Pseudoalteromonas haloplanktis

 58% id,
100% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory