Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella sp. ANA-3 (ANA3)

Found 88 curated entries in PaperBLAST's database that match '5.4.99.5'.

These curated entries have 59 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Shewanella sp. ANA-3, or try another query

Shewana3_3012: bifunctional chorismate mutase/prephenate dehydrogenase (RefSeq)
is similar to:
PaperBLAST

TyrA / b2600: fused chorismate mutase/prephenate dehydrogenase (EC 5.4.99.5; EC 1.3.1.12) from Escherichia coli
tyrA / P07023: fused chorismate mutase/prephenate dehydrogenase (EC 5.4.99.5; EC 1.3.1.12) from Escherichia coli

57% id,
99% cov

Shewana3_3007: chorismate mutase / prephenate dehydratase (RefSeq)
is similar to:
PaperBLAST

CMPDT_ECOLI / P0A9J8: Bifunctional chorismate mutase/prephenate dehydratase; Chorismate mutase-prephenate dehydratase; P-protein; EC 5.4.99.5; EC 4.2.1.51 from Escherichia coli
PheA / b2599: fused chorismate mutase/prephenate dehydratase (EC 5.4.99.5; EC 4.2.1.51) from Escherichia coli
CH_024084: P-protein; EC 4.2.1.51; EC 5.4.99.5 from Escherichia coli
pheA / P0A9J8: fused chorismate mutase/prephenate dehydratase (EC 5.4.99.5; EC 4.2.1.51) from Escherichia coli

55% id,
99% cov

C7EXK8: prephenate dehydratase (EC 4.2.1.51); chorismate mutase (EC 5.4.99.5) from Escherichia coli

55% id,
99% cov

CMPDT_BUCAI / P57472: Bifunctional chorismate mutase/prephenate dehydratase; Chorismate mutase-prephenate dehydratase; P-protein; EC 5.4.99.5; EC 4.2.1.51 from Buchnera aphidicola

41% id,
99% cov

More...

Shewana3_1941: thiamine biosynthesis protein ThiH (RefSeq)
is similar to:
PaperBLAST

PYLB_METBF / Q46E78: 3-methylornithine synthase; (2R,3R)-3-methylornithine synthase; (3R)-3-methyl-D-ornithine synthase; Pyrrolysine biosynthesis protein PylB; EC 5.4.99.58 from Methanosarcina barkeri
pylB / Q46E78: methylornithine synthase (EC 5.4.99.58) from Methanosarcina barkeri
Q46E78: methylornithine synthase (EC 5.4.99.58) from Methanosarcina barkeri

22% id,
99% cov

PYLB_METAC / Q8TUB9: 3-methylornithine synthase; (2R,3R)-3-methylornithine synthase; (3R)-3-methyl-D-ornithine synthase; Pyrrolysine biosynthesis protein PylB; EC 5.4.99.58 from Methanosarcina acetivorans

28% id,
44% cov

Shewana3_4071: isochorismate synthases (RefSeq)
is similar to:
PaperBLAST

MBTI_MYCTU / P9WFX1: Salicylate synthase; Chorismate mutase; CM; Isochorismate synthase/isochorismate lyase; Mycobactin synthase protein; EC 5.4.99.5; EC 4.2.99.21; EC 5.4.4.2 from Mycobacterium tuberculosis

27% id,
76% cov

Shewana3_0708: thiamine biosynthesis protein ThiH (RefSeq)
is similar to:
PaperBLAST

PYLB_METAC / Q8TUB9: 3-methylornithine synthase; (2R,3R)-3-methylornithine synthase; (3R)-3-methyl-D-ornithine synthase; Pyrrolysine biosynthesis protein PylB; EC 5.4.99.58 from Methanosarcina acetivorans

26% id,
72% cov

Shewana3_0775: 2-dehydro-3-deoxyphosphooctonate aldolase (RefSeq)
is similar to:
PaperBLAST

P39912: chorismate mutase (EC 5.4.99.5) from Bacillus subtilis

29% id,
63% cov

Shewana3_1520: anthranilate synthase component I (RefSeq)
is similar to:
PaperBLAST

MBTI_MYCTU / P9WFX1: Salicylate synthase; Chorismate mutase; CM; Isochorismate synthase/isochorismate lyase; Mycobactin synthase protein; EC 5.4.99.5; EC 4.2.99.21; EC 5.4.4.2 from Mycobacterium tuberculosis

29% id,
60% cov

Shewana3_2303: aminodeoxychorismate synthase, subunit I (RefSeq)
is similar to:
PaperBLAST

MBTI_MYCTU / P9WFX1: Salicylate synthase; Chorismate mutase; CM; Isochorismate synthase/isochorismate lyase; Mycobactin synthase protein; EC 5.4.99.5; EC 4.2.99.21; EC 5.4.4.2 from Mycobacterium tuberculosis

29% id,
56% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

896866-897723 (frame +1) on 248374
is similar to:
PaperBLAST

P39912: chorismate mutase (EC 5.4.99.5) from Bacillus subtilis
Also see hits to annotated proteins above

27% id,
72% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory