Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella sp. ANA-3 (ANA3)

Found 153 curated entries in PaperBLAST's database that match '5.5.1.1'.

These curated entries have 114 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Shewanella sp. ANA-3, or try another query

Shewana3_3502: 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (RefSeq)
is similar to:
PaperBLAST

LYCb / Q6YUU2: lycopene β-cyclase (EC 5.5.1.19) from Oryza sativa

24% id,
67% cov

Shewana3_1288: conjugal transfer protein TrbL (RefSeq)
is similar to:
PaperBLAST

A0A1X9RR88: lycopene beta-cyclase (EC 5.5.1.19) from Bangia fuscopurpurea

27% id,
30% cov

Shewana3_3647: rod shape-determining protein MreC (RefSeq)
is similar to:
PaperBLAST

A0A1X9RR88: lycopene beta-cyclase (EC 5.5.1.19) from Bangia fuscopurpurea

30% id,
11% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Did not find any hits to reading frames.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory