Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella sp. ANA-3 (ANA3)

Found 186 curated entries in PaperBLAST's database that match '6.2.1.1'.

These curated entries have 142 distinct sequences.

Running ublast with E ≤ 0.01

Found 13 relevant proteins in Shewanella sp. ANA-3, or try another query

Shewana3_2523: acetyl-CoA synthetase (RefSeq)
is similar to:
PaperBLAST

AO356_18695: Acetyl-coenzyme A synthetase (EC 6.2.1.1) from Pseudomonas fluorescens

71% id,
100% cov

AO353_03060: Acetyl-coenzyme A synthetase (EC 6.2.1.1) from Pseudomonas fluorescens

70% id,
100% cov

ACSA_ECOLI / P27550: Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 from Escherichia coli
AcsA / b4069: acetyl-CoA synthetase (AMP-forming) (EC 6.2.1.1; EC 6.2.1.17) from Escherichia coli
acs / P27550: acetyl-CoA synthetase (AMP-forming) (EC 6.2.1.17; EC 6.2.1.1) from Escherichia coli

70% id,
99% cov

More...

Shewana3_1675: AMP-dependent synthetase and ligase (RefSeq)
is similar to:
PaperBLAST

PGA1_c11900: Propionate--CoA ligase (EC 6.2.1.17) from Phaeobacter inhibens

60% id,
98% cov

prpE / Q5LPB4: propionate--CoA ligase (EC 6.2.1.17) from Ruegeria pomeroyi

59% id,
100% cov

ACSS3_RAT / A0A0G2K047: Acyl-CoA synthetase short-chain family member 3, mitochondrial; Acetate--CoA ligase 3; Acyl-CoA synthetase short-chain family member 3; Propionate--CoA ligase; EC 6.2.1.1; EC 6.2.1.17 from Rattus norvegicus
A0A0G2K047: propionate-CoA ligase (EC 6.2.1.17) from Rattus norvegicus

51% id,
93% cov

More...

Shewana3_2475: AMP-binding domain protein (RefSeq)
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

55% id,
98% cov

F1CYZ6: 4-coumarate-CoA ligase (EC 6.2.1.12) from Acetobacterium woodii

32% id,
98% cov

A0A0D4C3L0: 4-coumarate-CoA ligase (EC 6.2.1.12) from Plagiochasma appendiculatum

30% id,
92% cov

More...

Shewana3_2223: CoA-binding domain-containing protein (RefSeq)
is similar to:
PaperBLAST

C4LUV9: acetate-CoA ligase (ADP-forming) (EC 6.2.1.13) from Entamoeba histolytica

36% id,
99% cov

Q9NAT4: acetate-CoA ligase (ADP-forming) (EC 6.2.1.13) from Entamoeba histolytica

36% id,
99% cov

ACDA1_PYRFU / E7FI45: Acetate--CoA ligase [ADP-forming] I subunit alpha; ADP-forming acetyl coenzyme A synthetase I subunit alpha; ACS I subunit alpha; EC 6.2.1.13 from Pyrococcus furiosus
acdA / E7FI45: acetate-CoA ligase α subunit (EC 6.2.1.13) from Pyrococcus furiosus

35% id,
98% cov

More...

Shewana3_2386: long-chain-fatty-acid--CoA ligase (RefSeq)
is similar to:
PaperBLAST

O24146: 4-coumarate-CoA ligase (EC 6.2.1.12) from Nicotiana tabacum

32% id,
93% cov

B8QN50: 4-coumarate-CoA ligase (EC 6.2.1.12) from Pinus radiata

30% id,
98% cov

P41636: 4-coumarate-CoA ligase (EC 6.2.1.12) from Pinus taeda

30% id,
98% cov

More...

Shewana3_3231: AMP-dependent synthetase and ligase (RefSeq)
is similar to:
PaperBLAST

CCL1_HUMLU / M4ISH0: 4-coumarate--CoA ligase CCL1; HlCCL1; EC 6.2.1.12 from Humulus lupulus

32% id,
92% cov

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

31% id,
94% cov

A0A1L7H9K1: 4-coumarate-CoA ligase (EC 6.2.1.12) from Peucedanum praeruptorum

31% id,
92% cov

More...

Shewana3_1712: succinyl-CoA synthetase subunit beta (RefSeq)
is similar to:
PaperBLAST

ccsA / Q75VW8: citryl-CoA synthetase large subunit (EC 6.2.1.18) from Hydrogenobacter thermophilus
Q75VW8: citrate-CoA ligase (EC 6.2.1.18) from Hydrogenobacter thermophilus

31% id,
93% cov

Shewana3_1713: succinyl-CoA synthetase (ADP-forming) alpha subunit (RefSeq)
is similar to:
PaperBLAST

ccsB / Q75VW6: citryl-CoA synthetase small subunit (EC 6.2.1.18) from Hydrogenobacter thermophilus
Q75VW6: citrate-CoA ligase (EC 6.2.1.18) from Hydrogenobacter thermophilus

35% id,
82% cov

Shewana3_0080: AMP-dependent synthetase and ligase (RefSeq)
is similar to:
PaperBLAST

ACSL5_RAT / O88813: Long-chain-fatty-acid--CoA ligase 5; Arachidonate--CoA ligase; Long-chain acyl-CoA synthetase 5; LACS 5; EC 6.2.1.3; EC 6.2.1.15 from Rattus norvegicus

32% id,
85% cov

ACSL5_HUMAN / Q9ULC5: Long-chain-fatty-acid--CoA ligase 5; Arachidonate--CoA ligase; Long-chain acyl-CoA synthetase 5; LACS 5; EC 6.2.1.3; EC 6.2.1.15 from Homo sapiens

30% id,
85% cov

ACSL1_HUMAN / P33121: Long-chain-fatty-acid--CoA ligase 1; Acyl-CoA synthetase 1; ACS1; Arachidonate--CoA ligase; Long-chain acyl-CoA synthetase 1; LACS 1; Long-chain acyl-CoA synthetase 2; LACS 2; Long-chain fatty acid-CoA ligase 2; Palmitoyl-CoA ligase 1; Palmitoyl-CoA ligase 2; Phytanate--CoA ligase; EC 6.2.1.3; EC 6.2.1.15; EC 6.2.1.24 from Homo sapiens
ACSL1 / P33121: long-chain-fatty-acid--CoA ligase 1 (EC 6.2.1.3; EC 6.2.1.15) from Homo sapiens

30% id,
83% cov

More...

Shewana3_3968: O-succinylbenzoate-CoA ligase (RefSeq)
is similar to:
PaperBLAST

A0A1L7H9I4: 4-coumarate-CoA ligase (EC 6.2.1.12) from Peucedanum praeruptorum

26% id,
94% cov

O24146: 4-coumarate-CoA ligase (EC 6.2.1.12) from Nicotiana tabacum

25% id,
95% cov

HBCL1_METS5 / A4YDT1: 4-hydroxybutyrate--CoA ligase 1; Acetate--CoA ligase; Butyrate--CoA ligase; Propionate--CoA ligase; EC 6.2.1.40; EC 6.2.1.1; EC 6.2.1.2; EC 6.2.1.17 from Metallosphaera sedula

22% id,
80% cov

More...

Shewana3_3814: AMP-dependent synthetase and ligase (RefSeq)
is similar to:
PaperBLAST

ACSL6_HUMAN / Q9UKU0: Long-chain-fatty-acid--CoA ligase 6; Arachidonate--CoA ligase; Long-chain acyl-CoA synthetase 6; LACS 6; EC 6.2.1.3; EC 6.2.1.15 from Homo sapiens
ACSL6 / Q9UKU0: long-chain acyl-CoA synthetase 6 (EC 6.2.1.15) from Homo sapiens

28% id,
84% cov

A0A0D4C3L0: 4-coumarate-CoA ligase (EC 6.2.1.12) from Plagiochasma appendiculatum

25% id,
91% cov

ACSL6_RAT / P33124: Long-chain-fatty-acid--CoA ligase 6; Arachidonate--CoA ligase; Long-chain acyl-CoA synthetase 6; LACS 6; Long-chain-fatty-acid--CoA ligase, brain isozyme; EC 6.2.1.3; EC 6.2.1.15 from Rattus norvegicus

26% id,
84% cov

More...

Shewana3_2713: peptide synthase (RefSeq)
is similar to:
PaperBLAST

YahU / b0335: propionyl-CoA synthetase (EC 6.2.1.17) from Escherichia coli
prpE / P77495: propionyl-CoA synthetase (EC 6.2.1.17) from Escherichia coli
P77495: propionate-CoA ligase (EC 6.2.1.17) from Escherichia coli

24% id,
79% cov

B8QN50: 4-coumarate-CoA ligase (EC 6.2.1.12) from Pinus radiata

22% id,
81% cov

PRPE_SALTY / P55912: Propionate--CoA ligase; Propionyl-CoA synthetase; EC 6.2.1.17 from Salmonella typhimurium
prpE / P55912: propionate-CoA ligase (EC 6.2.1.17) from Salmonella typhimurium

24% id,
73% cov

More...

Shewana3_0338: aconitate hydratase (RefSeq)
is similar to:
PaperBLAST

facA: acetyl-coenzyme A synthetase; EC 6.2.1.1 from Emericella nidulans

21% id,
54% cov

A0A0D4C3L0: 4-coumarate-CoA ligase (EC 6.2.1.12) from Plagiochasma appendiculatum

24% id,
22% cov

ACSA_ECOLI / P27550: Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 from Escherichia coli
AcsA / b4069: acetyl-CoA synthetase (AMP-forming) (EC 6.2.1.1; EC 6.2.1.17) from Escherichia coli
acs / P27550: acetyl-CoA synthetase (AMP-forming) (EC 6.2.1.17; EC 6.2.1.1) from Escherichia coli

24% id,
18% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 13 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2864918-2866597 (frame -1) on 248374
is similar to:
PaperBLAST

O24146: 4-coumarate-CoA ligase (EC 6.2.1.12) from Nicotiana tabacum
Also see hits to annotated proteins above

32% id,
98% cov

Q3HUN0: 4-coumarate-CoA ligase (EC 6.2.1.12) from Camellia sinensis
Also see hits to annotated proteins above

29% id,
90% cov

4CL5_ORYSJ / Q6ZAC1: 4-coumarate--CoA ligase 5; 4CL 5; Os4CL5; 4-coumaroyl-CoA synthase 5; EC 6.2.1.12 from Oryza sativa
Q6ZAC1: 4-coumarate-CoA ligase (EC 6.2.1.12) from Oryza sativa
Also see hits to annotated proteins above

29% id,
25% cov

More...

2017977-2018864 (frame +3) on 248374
is similar to:
PaperBLAST

ccsB / Q75VW6: citryl-CoA synthetase small subunit (EC 6.2.1.18) from Hydrogenobacter thermophilus
Q75VW6: citrate-CoA ligase (EC 6.2.1.18) from Hydrogenobacter thermophilus
Also see hits to annotated proteins above

35% id,
84% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory