Curated BLAST for Genomes


Curated BLAST

Searching in Shewanella sp. ANA-3 (ANA3)

Found 6 curated entries in PaperBLAST's database that match 'deoxy%ribonate transporter' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Shewanella sp. ANA-3, or try another query

Shewana3_1270: major facilitator transporter (RefSeq)
is similar to:

H281DRAFT_00642: 2-deoxy-D-ribonate transporter from Paraburkholderia bryophila

24% id,
96% cov

Shewana3_2224: EmrB/QacA family drug resistance transporter (RefSeq)
is similar to:

BWI76_RS23725: 2-deoxy-D-ribonate transporter 2 from Klebsiella michiganensis

24% id,
30% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory