Curated BLAST for Genomes


Curated BLAST

Searching in Shewanella sp. ANA-3 (ANA3)

Found 1 curated entries in PaperBLAST's database that match 'deoxy%ribose dehydrogenase%alpha' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Shewanella sp. ANA-3, or try another query

Shewana3_1496: 2Fe-2S iron-sulfur cluster binding domain-containing protein (RefSeq)
is similar to:

C7A11_18890 / A0A1N7UJP4: 2-deoxy-D-ribose dehydrogenase α subunit from Pseudomonas simiae

52% id,
99% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory