Curated BLAST for Genomes

 

Curated BLAST

Searching in Burkholderia phytofirmans PsJN (BFirm)

Found 17 curated entries in PaperBLAST's database that match '1.1.1.18' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Burkholderia phytofirmans PsJN, or try another query

BPHYT_RS13885: myo-inositol 2-dehydrogenase
is similar to:
PaperBLAST

HSERO_RS12095: Myo-inositol 2-dehydrogenase (EC 1.1.1.18) from Herbaspirillum seropedicae

72% id,
99% cov

MI2D_RHIME / O68965: Inositol 2-dehydrogenase; Myo-inositol 2-dehydrogenase; MI-dehydrogenase; EC 1.1.1.18 from Rhizobium meliloti
SM_b20899: Inositol 2-dehydrogenase (EC 1.1.1.18) from Sinorhizobium meliloti
O68965: inositol 2-dehydrogenase (EC 1.1.1.18) from Sinorhizobium meliloti

47% id,
100% cov

Q9EZV8: inositol 2-dehydrogenase (EC 1.1.1.18) from Sinorhizobium fredii

45% id,
100% cov

More...

BPHYT_RS13880: oxidoreductase
is similar to:
PaperBLAST

E1U888: inositol 2-dehydrogenase (EC 1.1.1.18) from Lactobacillus casei

39% id,
96% cov

IOLG_THEMA / Q9WYP5: Myo-inositol 2-dehydrogenase; EC 1.1.1.18 from Thermotoga maritima
iolG / Q9WYP5: myo-inositol 2-dehydrogenase (EC 1.1.1.18) from Thermotoga maritima

36% id,
99% cov

MI2D_RHIME / O68965: Inositol 2-dehydrogenase; Myo-inositol 2-dehydrogenase; MI-dehydrogenase; EC 1.1.1.18 from Rhizobium meliloti
SM_b20899: Inositol 2-dehydrogenase (EC 1.1.1.18) from Sinorhizobium meliloti
O68965: inositol 2-dehydrogenase (EC 1.1.1.18) from Sinorhizobium meliloti

34% id,
99% cov

More...

BPHYT_RS19310: oxidoreductase
is similar to:
PaperBLAST

MI2D_RHIME / O68965: Inositol 2-dehydrogenase; Myo-inositol 2-dehydrogenase; MI-dehydrogenase; EC 1.1.1.18 from Rhizobium meliloti
SM_b20899: Inositol 2-dehydrogenase (EC 1.1.1.18) from Sinorhizobium meliloti
O68965: inositol 2-dehydrogenase (EC 1.1.1.18) from Sinorhizobium meliloti

28% id,
98% cov

Q9EZV8: inositol 2-dehydrogenase (EC 1.1.1.18) from Sinorhizobium fredii

26% id,
98% cov

IOLG_THEMA / Q9WYP5: Myo-inositol 2-dehydrogenase; EC 1.1.1.18 from Thermotoga maritima
iolG / Q9WYP5: myo-inositol 2-dehydrogenase (EC 1.1.1.18) from Thermotoga maritima

25% id,
55% cov

BPHYT_RS08545: oxidoreductase
is similar to:
PaperBLAST

Q9EZV8: inositol 2-dehydrogenase (EC 1.1.1.18) from Sinorhizobium fredii

26% id,
98% cov

MI2D_RHIME / O68965: Inositol 2-dehydrogenase; Myo-inositol 2-dehydrogenase; MI-dehydrogenase; EC 1.1.1.18 from Rhizobium meliloti
SM_b20899: Inositol 2-dehydrogenase (EC 1.1.1.18) from Sinorhizobium meliloti
O68965: inositol 2-dehydrogenase (EC 1.1.1.18) from Sinorhizobium meliloti

25% id,
98% cov

iolG / A0A0H3FQ94: myo-inositol 2-dehydrogenase (EC 1.1.1.18) from Klebsiella aerogenes

27% id,
45% cov

BPHYT_RS20760: oxidoreductase domain-containing protein
is similar to:
PaperBLAST

Q9EZV8: inositol 2-dehydrogenase (EC 1.1.1.18) from Sinorhizobium fredii

27% id,
93% cov

MI2D_RHIME / O68965: Inositol 2-dehydrogenase; Myo-inositol 2-dehydrogenase; MI-dehydrogenase; EC 1.1.1.18 from Rhizobium meliloti
SM_b20899: Inositol 2-dehydrogenase (EC 1.1.1.18) from Sinorhizobium meliloti
O68965: inositol 2-dehydrogenase (EC 1.1.1.18) from Sinorhizobium meliloti

25% id,
93% cov

HSERO_RS12095: Myo-inositol 2-dehydrogenase (EC 1.1.1.18) from Herbaspirillum seropedicae

23% id,
82% cov

More...

BPHYT_RS20390: oxidoreductase
is similar to:
PaperBLAST

AO356_23190: Inositol 2-dehydrogenase (EC 1.1.1.18) from Pseudomonas fluorescens

26% id,
97% cov

AO353_21365: Inositol 2-dehydrogenase (EC 1.1.1.18) from Pseudomonas fluorescens

25% id,
96% cov

BWI76_RS03095: Inositol 2-dehydrogenase (EC 1.1.1.18) from Klebsiella michiganensis

23% id,
96% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory