Curated BLAST for Genomes


Curated BLAST

Searching in Burkholderia phytofirmans PsJN (BFirm)

Found 10 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Burkholderia phytofirmans PsJN, or try another query

BPHYT_RS17710: histidinol dehydrogenase
is similar to:

Q8G2R2: histidinol dehydrogenase (EC from Brucella suis

48% id,
100% cov

HISX_ECOLI / P06988: Histidinol dehydrogenase; HDH; EC from Escherichia coli
hisD / P06988: histidinal/histidinol dehydrogenase (EC from Escherichia coli

41% id,
97% cov

HISX_SALTY / P10370: Histidinol dehydrogenase; HDH; EC from Salmonella typhimurium

40% id,
97% cov


BPHYT_RS17675: phosphoribosyl-AMP cyclohydrolase
is similar to:

HIS2_YEAST / P00815: Histidine biosynthesis trifunctional protein; EC; EC; EC from Saccharomyces cerevisiae

36% id,
13% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory