Curated BLAST for Genomes

 

Curated BLAST

Searching in Burkholderia phytofirmans PsJN (BFirm)

Found 67 curated entries in PaperBLAST's database that match '1.1.1.42' as complete word(s).

These curated entries have 46 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Burkholderia phytofirmans PsJN, or try another query

BPHYT_RS20300: isocitrate dehydrogenase
is similar to:
PaperBLAST

IDH_AZOVI / P16100: Isocitrate dehydrogenase [NADP]; IDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Azotobacter vinelandii
icd / P16100: isocitrate dehydrogenase (NADP-dependent) (EC 1.1.1.42) from Azotobacter vinelandii

82% id,
100% cov

idh / Q8L0X8: isocitrate dehydrogenase (EC 1.1.1.42) from Chlorobium limicola

69% id,
100% cov

Q1XIQ9: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Colwellia psychrerythraea

67% id,
100% cov

More...

BPHYT_RS15730: isocitrate dehydrogenase
is similar to:
PaperBLAST

IDH_PSEAB / Q02NB5: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Pseudomonas aeruginosa

77% id,
100% cov

IDH_ECOLI / P08200: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Escherichia coli
IcdE / b1136: isocitrate dehydrogenase (EC 1.1.1.42) from Escherichia coli
icd / P08200: isocitrate dehydrogenase (EC 1.1.1.42) from Escherichia coli
P08200: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42); [Isocitrate dehydrogenase (NADP+)] kinase (EC 2.7.11.5) from Escherichia coli

76% id,
99% cov

IDH_COXBU / Q9ZH99: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Coxiella burnetii

76% id,
98% cov

More...

BPHYT_RS25050: 3-isopropylmalate dehydrogenase
is similar to:
PaperBLAST

O29610: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Archaeoglobus fulgidus

32% id,
91% cov

Q9HLV8: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Thermoplasma acidophilum

30% id,
89% cov

IDH_PSEAB / Q02NB5: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Pseudomonas aeruginosa

30% id,
87% cov

More...

BPHYT_RS33900: 3-isopropylmalate dehydrogenase
is similar to:
PaperBLAST

O29610: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Archaeoglobus fulgidus

31% id,
92% cov

IDH_COXBU / Q9ZH99: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Coxiella burnetii

28% id,
90% cov

icd / B2ZP83: isocitrate dehydrogenase subunit (EC 1.1.1.42) from Helicobacter pylori

28% id,
90% cov

More...

BPHYT_RS30235: tartrate dehydrogenase
is similar to:
PaperBLAST

O29610: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Archaeoglobus fulgidus

30% id,
92% cov

icd / Q5UXA4: isocitrate dehydrogenase, NADP (EC 1.1.1.42) from Haloarcula marismortui

29% id,
91% cov

Q9HLV8: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Thermoplasma acidophilum

28% id,
95% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory