Curated BLAST for Genomes

 

Curated BLAST

Searching in Burkholderia phytofirmans PsJN (BFirm)

Found 17 curated entries in PaperBLAST's database that match '1.13.11.2' as complete word(s).

These curated entries have 14 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Burkholderia phytofirmans PsJN, or try another query

BPHYT_RS34985: glyoxalase
is similar to:
PaperBLAST

CADE_BACSU / P54721: Catechol-2,3-dioxygenase; Catechol-induced ring cleavage extradiol dioxygenase; EC 1.13.11.2 from Bacillus subtilis

23% id,
88% cov

BPHYT_RS07340: glyoxalase
is similar to:
PaperBLAST

Q7WYF5: catechol 2,3-dioxygenase (EC 1.13.11.2) from Pseudomonas sp.

25% id,
48% cov

Q842G7: catechol 2,3-dioxygenase (EC 1.13.11.2) from Pseudomonas putida

25% id,
45% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1664536-1665231 (frame +1) on NC_010681
is similar to:
PaperBLAST

E7DDG2: catechol 2,3-dioxygenase (EC 1.13.11.2) from Planococcus sp.

24% id,
58% cov

Q8KLV4: catechol 2,3-dioxygenase (EC 1.13.11.2) from Pseudomonas stutzeri

22% id,
58% cov

Q7WYF5: catechol 2,3-dioxygenase (EC 1.13.11.2) from Pseudomonas sp.
Also see hits to annotated proteins above

24% id,
52% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory