Curated BLAST for Genomes

 

Curated BLAST

Searching in Burkholderia phytofirmans PsJN (BFirm)

Found 27 curated entries in PaperBLAST's database that match '1.13.11.27'.

These curated entries have 21 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Burkholderia phytofirmans PsJN, or try another query

BPHYT_RS18295: 4-hydroxyphenylpyruvate dioxygenase
is similar to:
PaperBLAST

Pf6N2E2_456: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Pseudomonas fluorescens

59% id,
98% cov

AO353_26925: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Pseudomonas fluorescens

58% id,
99% cov

P80064: 4-hydroxyphenylpyruvate dioxygenase subunit (EC 1.13.11.27) from Pseudomonas sp.
P80064: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Pseudomonas fluorescens

58% id,
99% cov

More...

BPHYT_RS09010: 4-carboxymuconolactone decarboxylase
is similar to:
PaperBLAST

Q8EKK9: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Shewanella oneidensis

57% id,
95% cov

BPHYT_RS33445: 4-hydroxyphenylpyruvate dioxygenase
is similar to:
PaperBLAST

Ac3H11_1849: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Acidovorax sp.

43% id,
94% cov

Pf6N2E2_456: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Pseudomonas fluorescens

42% id,
96% cov

AO356_22845: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Pseudomonas fluorescens

41% id,
96% cov

More...

BPHYT_RS21435: 4-carboxymuconolactone decarboxylase
is similar to:
PaperBLAST

Q8EKK9: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Shewanella oneidensis

35% id,
99% cov

BPHYT_RS22675: 4-hydroxyphenylpyruvate dioxygenase
is similar to:
PaperBLAST

LLY_LEGPC / P69053: 4-hydroxyphenylpyruvate dioxygenase; 4HPPD; HPD; HPPDase; Legiolysin; EC 1.13.11.27 from Legionella pneumophila

33% id,
91% cov

AO356_22845: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Pseudomonas fluorescens

31% id,
94% cov

Pf6N2E2_456: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Pseudomonas fluorescens

31% id,
94% cov

More...

BPHYT_RS28360: carboxymuconolactone decarboxylase
is similar to:
PaperBLAST

Q8EKK9: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Shewanella oneidensis

35% id,
74% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory