Curated BLAST for Genomes

 

Curated BLAST

Searching in Burkholderia phytofirmans PsJN (BFirm)

Found 3 curated entries in PaperBLAST's database that match '1.2.1.77'.

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 10 relevant proteins in Burkholderia phytofirmans PsJN, or try another query

BPHYT_RS13360: aldehyde dehydrogenase
is similar to:
PaperBLAST

Q13WK4: 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase (NADP+) (EC 1.2.1.77) from Paraburkholderia xenovorans

93% id,
100% cov

BOXD_AROEV / Q84HH8: 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase; EC 1.2.1.77 from Aromatoleum evansii
boxD / Q84HH8: 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase monomer (EC 1.2.1.77) from Aromatoleum evansii

57% id,
93% cov

BPHYT_RS29875: betaine-aldehyde dehydrogenase
is similar to:
PaperBLAST

BOXD_AROEV / Q84HH8: 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase; EC 1.2.1.77 from Aromatoleum evansii
boxD / Q84HH8: 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase monomer (EC 1.2.1.77) from Aromatoleum evansii

30% id,
82% cov

BPHYT_RS32650: aldehyde dehydrogenase
is similar to:
PaperBLAST

BOXD_AROEV / Q84HH8: 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase; EC 1.2.1.77 from Aromatoleum evansii
boxD / Q84HH8: 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase monomer (EC 1.2.1.77) from Aromatoleum evansii

26% id,
95% cov

Q13WK4: 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase (NADP+) (EC 1.2.1.77) from Paraburkholderia xenovorans

25% id,
95% cov

BPHYT_RS34305: succinate-semialdehyde dehydrogenase
is similar to:
PaperBLAST

BOXD_AROEV / Q84HH8: 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase; EC 1.2.1.77 from Aromatoleum evansii
boxD / Q84HH8: 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase monomer (EC 1.2.1.77) from Aromatoleum evansii

26% id,
91% cov

BPHYT_RS06150: aldehyde dehydrogenase
is similar to:
PaperBLAST

Q13WK4: 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase (NADP+) (EC 1.2.1.77) from Paraburkholderia xenovorans

26% id,
91% cov

BPHYT_RS22430: succinate-semialdehyde dehydrogenase
is similar to:
PaperBLAST

Q13WK4: 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase (NADP+) (EC 1.2.1.77) from Paraburkholderia xenovorans

25% id,
92% cov

BPHYT_RS19355: bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase
is similar to:
PaperBLAST

Q13WK4: 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase (NADP+) (EC 1.2.1.77) from Paraburkholderia xenovorans

24% id,
93% cov

BOXD_AROEV / Q84HH8: 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase; EC 1.2.1.77 from Aromatoleum evansii
boxD / Q84HH8: 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase monomer (EC 1.2.1.77) from Aromatoleum evansii

25% id,
72% cov

BPHYT_RS19710: aldehyde dehydrogenase
is similar to:
PaperBLAST

Q13WK4: 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase (NADP+) (EC 1.2.1.77) from Paraburkholderia xenovorans

24% id,
89% cov

BPHYT_RS09875: aldehyde dehydrogenase
is similar to:
PaperBLAST

BOXD_AROEV / Q84HH8: 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase; EC 1.2.1.77 from Aromatoleum evansii
boxD / Q84HH8: 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase monomer (EC 1.2.1.77) from Aromatoleum evansii

24% id,
84% cov

BPHYT_RS21710: DeoR faimly transcriptional regulator
is similar to:
PaperBLAST

Q13WK4: 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase (NADP+) (EC 1.2.1.77) from Paraburkholderia xenovorans

24% id,
84% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory