Curated BLAST for Genomes

 

Curated BLAST

Searching in Burkholderia phytofirmans PsJN (BFirm)

Found 2 curated entries in PaperBLAST's database that match '1.4.3.10'.

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 18 relevant proteins in Burkholderia phytofirmans PsJN, or try another query

BPHYT_RS09910: tyramine oxidase
is similar to:
PaperBLAST

AO1 / O23349: copper-containing amine oxidase (EC 1.4.3.21; EC 1.4.3.10) from Arabidopsis thaliana

30% id,
97% cov

BPHYT_RS08120: dihydrolipoamide dehydrogenase
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

26% id,
48% cov

BPHYT_RS17850: dihydropyrimidine dehydrogenase subunit A
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

29% id,
37% cov

BPHYT_RS04340: hypothetical protein
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

29% id,
33% cov

BPHYT_RS15105: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

31% id,
27% cov

BPHYT_RS25195: N-methylproline demethylase
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

31% id,
27% cov

BPHYT_RS13315: dihydropyrimidine dehydrogenase subunit A
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

34% id,
18% cov

BPHYT_RS25115: sarcosine oxidase subunit alpha
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

30% id,
19% cov

BPHYT_RS00360: protoporphyrinogen oxidase
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

39% id,
15% cov

BPHYT_RS32320: nopaline dehydrogenase
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

31% id,
18% cov

BPHYT_RS17595: NAD(FAD)-utilizing dehydrogenase
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

33% id,
15% cov

BPHYT_RS21995: (2Fe-2S)-binding protein
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

48% id,
10% cov

BPHYT_RS22650: pyridine nucleotide-disulfide oxidoreductase
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

51% id,
9% cov

BPHYT_RS13185: 2,4-dienoyl-CoA reductase
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

44% id,
9% cov

BPHYT_RS30170: (2Fe-2S)-binding protein
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

43% id,
9% cov

BPHYT_RS09375: (2Fe-2S)-binding protein
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

46% id,
8% cov

BPHYT_RS11120: ferredoxin--NADP reductase
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

43% id,
8% cov

BPHYT_RS04150: UDP-galactopyranose mutase
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

37% id,
9% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 12 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory