Curated BLAST for Genomes

 

Curated BLAST

Searching in Burkholderia phytofirmans PsJN (BFirm)

Found 23 curated entries in PaperBLAST's database that match '1.4.3.3'.

These curated entries have 20 distinct sequences.

Running ublast with E ≤ 0.01

Found 19 relevant proteins in Burkholderia phytofirmans PsJN, or try another query

BPHYT_RS10270: D-amino acid dehydrogenase
is similar to:
PaperBLAST

amaD / Q88GX1: D-lysine oxidase (EC 1.4.3.3) from Pseudomonas putida

56% id,
100% cov

BPHYT_RS19850: 50S ribosomal protein L34
is similar to:
PaperBLAST

P80340: D-amino-acid oxidase (EC 1.4.3.3) from Rhodotorula toruloides

63% id,
88% cov

BPHYT_RS22250: D-amino acid dehydrogenase
is similar to:
PaperBLAST

amaD / Q88GX1: D-lysine oxidase (EC 1.4.3.3) from Pseudomonas putida

53% id,
100% cov

A0PFJ3: D-amino-acid oxidase (EC 1.4.3.3) from Zea mays

45% id,
17% cov

BPHYT_RS26530: amino acid dehydrogenase
is similar to:
PaperBLAST

amaD / Q88GX1: D-lysine oxidase (EC 1.4.3.3) from Pseudomonas putida

30% id,
99% cov

thiO / O31616: glycine oxidase monomer (EC 1.4.3.19; EC 1.4.3.3) from Bacillus subtilis

28% id,
42% cov

Q6R4Q9: D-amino-acid oxidase (EC 1.4.3.3) from Trigonopsis variabilis

34% id,
21% cov

More...

BPHYT_RS21990: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

thiO / O31616: glycine oxidase monomer (EC 1.4.3.19; EC 1.4.3.3) from Bacillus subtilis

27% id,
99% cov

BPHYT_RS32645: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

A0PFJ3: D-amino-acid oxidase (EC 1.4.3.3) from Zea mays

29% id,
85% cov

BPHYT_RS09370: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

thiO / O31616: glycine oxidase monomer (EC 1.4.3.19; EC 1.4.3.3) from Bacillus subtilis

25% id,
97% cov

amaD / Q88GX1: D-lysine oxidase (EC 1.4.3.3) from Pseudomonas putida

22% id,
76% cov

BPHYT_RS25105: sarcosine oxidase subunit beta
is similar to:
PaperBLAST

thiO / O31616: glycine oxidase monomer (EC 1.4.3.19; EC 1.4.3.3) from Bacillus subtilis

24% id,
98% cov

BPHYT_RS24345: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

thiO / O31616: glycine oxidase monomer (EC 1.4.3.19; EC 1.4.3.3) from Bacillus subtilis

26% id,
88% cov

BPHYT_RS30165: sarcosine oxidase subunit beta
is similar to:
PaperBLAST

thiO / O31616: glycine oxidase monomer (EC 1.4.3.19; EC 1.4.3.3) from Bacillus subtilis

25% id,
93% cov

BPHYT_RS01330: FAD dependent oxidoreductase
is similar to:
PaperBLAST

thiO / O31616: glycine oxidase monomer (EC 1.4.3.19; EC 1.4.3.3) from Bacillus subtilis

23% id,
98% cov

BPHYT_RS29290: D-amino acid oxidase
is similar to:
PaperBLAST

thiO / O31616: glycine oxidase monomer (EC 1.4.3.19; EC 1.4.3.3) from Bacillus subtilis

25% id,
82% cov

A0PFJ3: D-amino-acid oxidase (EC 1.4.3.3) from Zea mays

36% id,
28% cov

BPHYT_RS09385: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

thiO / O31616: glycine oxidase monomer (EC 1.4.3.19; EC 1.4.3.3) from Bacillus subtilis

21% id,
95% cov

BPHYT_RS13575: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

amaD / Q88GX1: D-lysine oxidase (EC 1.4.3.3) from Pseudomonas putida

31% id,
58% cov

BPHYT_RS14790: D-amino acid dehydrogenase
is similar to:
PaperBLAST

P80324: D-amino-acid oxidase (EC 1.4.3.3) from Rhodotorula toruloides

29% id,
46% cov

Q7X2D3: D-amino-acid oxidase (EC 1.4.3.3) from Glutamicibacter protophormiae

44% id,
13% cov

Q6R4Q9: D-amino-acid oxidase (EC 1.4.3.3) from Trigonopsis variabilis

45% id,
13% cov

More...

BPHYT_RS13020: mercuric reductase
is similar to:
PaperBLAST

thiO / O31616: glycine oxidase monomer (EC 1.4.3.19; EC 1.4.3.3) from Bacillus subtilis

38% id,
16% cov

BPHYT_RS21010: D-amino acid dehydrogenase
is similar to:
PaperBLAST

P80324: D-amino-acid oxidase (EC 1.4.3.3) from Rhodotorula toruloides

33% id,
16% cov

BPHYT_RS13315: dihydropyrimidine dehydrogenase subunit A
is similar to:
PaperBLAST

Q7X2D3: D-amino-acid oxidase (EC 1.4.3.3) from Glutamicibacter protophormiae

53% id,
9% cov

BPHYT_RS35025: sarcosine oxidase
is similar to:
PaperBLAST

Q6R4Q9: D-amino-acid oxidase (EC 1.4.3.3) from Trigonopsis variabilis

40% id,
8% cov

Q99042: D-amino-acid oxidase (EC 1.4.3.3) from Trigonopsis variabilis

40% id,
8% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 18 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

271821-273311 (frame -3) on NC_010676
is similar to:
PaperBLAST

Q7X2D3: D-amino-acid oxidase (EC 1.4.3.3) from Glutamicibacter protophormiae
Also see hits to annotated proteins above

52% id,
13% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory