Curated BLAST for Genomes


Curated BLAST

Searching in Burkholderia phytofirmans PsJN (BFirm)

Found 25 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 18 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Burkholderia phytofirmans PsJN, or try another query

BPHYT_RS19330: glycine dehydrogenase (decarboxylating)
is similar to:

Pf6N2E2_5558: Glycine dehydrogenase (aminomethyl-transferring) (EC from Pseudomonas fluorescens

67% id,
99% cov

PS417_22360: Glycine dehydrogenase (aminomethyl-transferring) (EC from Pseudomonas simiae

67% id,
99% cov

AO353_03500: Glycine dehydrogenase (aminomethyl-transferring) (EC from Pseudomonas fluorescens

66% id,
99% cov


BPHYT_RS19325: glycine cleavage system H protein
is similar to:

P25855: glycine cleavage system (subunit 3/5) (EC; glycine dehydrogenase (aminomethyl-transferring) (EC from Arabidopsis thaliana

45% id,
70% cov

P23434: glycine cleavage system (subunit 3/4) (EC; glycine dehydrogenase (aminomethyl-transferring) (EC from Homo sapiens

47% id,
68% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory