Curated BLAST for Genomes

 

Curated BLAST

Searching in Burkholderia phytofirmans PsJN (BFirm)

Found 124 curated entries in PaperBLAST's database that match '1.5.1.2'.

These curated entries have 99 distinct sequences.

Running ublast with E ≤ 0.01

Found 12 relevant proteins in Burkholderia phytofirmans PsJN, or try another query

BPHYT_RS18705: 5,10-methylenetetrahydrofolate reductase
is similar to:
PaperBLAST

Q8Y389: methylenetetrahydrofolate reductase [NAD(P)H] (EC 1.5.1.20) from Ralstonia solanacearum

78% id,
100% cov

Q7NZF6: methylenetetrahydrofolate reductase [NAD(P)H] (EC 1.5.1.20) from Chromobacterium violaceum

67% id,
99% cov

Q6J6A1: methylenetetrahydrofolate reductase [NAD(P)H] (EC 1.5.1.20) from Collimonas fungivorans

67% id,
97% cov

More...

BPHYT_RS03490: pyrroline-5-carboxylate reductase
is similar to:
PaperBLAST

P5CR_PSEAE / P22008: Pyrroline-5-carboxylate reductase; P5C reductase; P5CR; PCA reductase; EC 1.5.1.2 from Pseudomonas aeruginosa

46% id,
99% cov

CCNA_00528: pyrroline-5-carboxylate reductase (EC 1.5.1.2) from Caulobacter crescentus

42% id,
98% cov

Shew_1136: pyrroline-5-carboxylate reductase (EC 1.5.1.2) from Shewanella loihica

40% id,
99% cov

More...

BPHYT_RS12865: bifunctional protein FolD
is similar to:
PaperBLAST

D3YZG8: methylenetetrahydrofolate reductase [NAD(P)H] (EC 1.5.1.20) from Mus musculus

46% id,
88% cov

D3ZUA0: methylenetetrahydrofolate reductase [NAD(P)H] (EC 1.5.1.20) from Rattus norvegicus

46% id,
87% cov

BPHYT_RS21000: ornithine cyclodeaminase
is similar to:
PaperBLAST

F1RPC8: 1-piperideine-2-carboxylate/1-pyrroline-2-carboxylate reductase (NADPH) (EC 1.5.1.21) from Sus scrofa

33% id,
96% cov

CRYM_HUMAN / Q14894: Ketimine reductase mu-crystallin; NADP-regulated thyroid-hormone-binding protein; EC 1.5.1.25 from Homo sapiens
CRYM / Q14894: ketimine reductase monomer (EC 1.5.1.1; EC 1.5.1.25) from Homo sapiens
Q14894: 1-piperideine-2-carboxylate/1-pyrroline-2-carboxylate reductase (NADPH) (EC 1.5.1.21); thiomorpholine-carboxylate dehydrogenase (EC 1.5.1.25) from Homo sapiens

32% id,
94% cov

Q9QYU4: 1-piperideine-2-carboxylate/1-pyrroline-2-carboxylate reductase (NADPH) (EC 1.5.1.21) from Rattus norvegicus

31% id,
94% cov

More...

BPHYT_RS27110: dehydrogenase
is similar to:
PaperBLAST

PY2CR_PSEUB / Q4U331: Delta(1)-pyrroline-2-carboxylate/Delta(1)-piperideine-2-carboxylate reductase; Pyr2C/Pip2C reductase; N-methyl-L-amino acid dehydrogenase; EC 1.5.1.21; EC 1.4.1.17 from Pseudomonas syringae
Q4U331: 1-piperideine-2-carboxylate/1-pyrroline-2-carboxylate reductase (NADPH) (EC 1.5.1.21) from Pseudomonas syringae

32% id,
97% cov

PY2CR_PSEPU / Q5FB93: Delta(1)-pyrroline-2-carboxylate/Delta(1)-piperideine-2-carboxylate reductase; Pyr2C/Pip2C reductase; N-methyl-L-amino acid dehydrogenase; NMAADH; EC 1.5.1.21; EC 1.4.1.17 from Pseudomonas putida

31% id,
96% cov

PY2CR_PSEAE / Q9I492: Delta(1)-pyrroline-2-carboxylate/Delta(1)-piperideine-2-carboxylate reductase; Pyr2C/Pip2C reductase; Delta(1)-pyrroline-(4S)-hydroxy-2-carboxylate reductase; Pyr4SH2C reductase; Proline ketimine reductase; EC 1.5.1.21; EC 1.5.1.- from Pseudomonas aeruginosa
Q9I492: 1-piperideine-2-carboxylate/1-pyrroline-2-carboxylate reductase (NADPH) (EC 1.5.1.21) from Pseudomonas aeruginosa

28% id,
99% cov

BPHYT_RS28460: malate dehydrogenase
is similar to:
PaperBLAST

PY2CR_PSEPU / Q5FB93: Delta(1)-pyrroline-2-carboxylate/Delta(1)-piperideine-2-carboxylate reductase; Pyr2C/Pip2C reductase; N-methyl-L-amino acid dehydrogenase; NMAADH; EC 1.5.1.21; EC 1.4.1.17 from Pseudomonas putida

29% id,
96% cov

PY2CR_PSEUB / Q4U331: Delta(1)-pyrroline-2-carboxylate/Delta(1)-piperideine-2-carboxylate reductase; Pyr2C/Pip2C reductase; N-methyl-L-amino acid dehydrogenase; EC 1.5.1.21; EC 1.4.1.17 from Pseudomonas syringae
Q4U331: 1-piperideine-2-carboxylate/1-pyrroline-2-carboxylate reductase (NADPH) (EC 1.5.1.21) from Pseudomonas syringae

29% id,
92% cov

PY2CR_PSEAE / Q9I492: Delta(1)-pyrroline-2-carboxylate/Delta(1)-piperideine-2-carboxylate reductase; Pyr2C/Pip2C reductase; Delta(1)-pyrroline-(4S)-hydroxy-2-carboxylate reductase; Pyr4SH2C reductase; Proline ketimine reductase; EC 1.5.1.21; EC 1.5.1.- from Pseudomonas aeruginosa
Q9I492: 1-piperideine-2-carboxylate/1-pyrroline-2-carboxylate reductase (NADPH) (EC 1.5.1.21) from Pseudomonas aeruginosa

27% id,
94% cov

BPHYT_RS24365: ornithine cyclodeaminase
is similar to:
PaperBLAST

Q9QYU4: 1-piperideine-2-carboxylate/1-pyrroline-2-carboxylate reductase (NADPH) (EC 1.5.1.21) from Rattus norvegicus

28% id,
93% cov

O54983: 1-piperideine-2-carboxylate/1-pyrroline-2-carboxylate reductase (NADPH) (EC 1.5.1.21) from Mus musculus

28% id,
93% cov

CRYM_HUMAN / Q14894: Ketimine reductase mu-crystallin; NADP-regulated thyroid-hormone-binding protein; EC 1.5.1.25 from Homo sapiens
CRYM / Q14894: ketimine reductase monomer (EC 1.5.1.1; EC 1.5.1.25) from Homo sapiens
Q14894: 1-piperideine-2-carboxylate/1-pyrroline-2-carboxylate reductase (NADPH) (EC 1.5.1.21); thiomorpholine-carboxylate dehydrogenase (EC 1.5.1.25) from Homo sapiens

27% id,
93% cov

More...

BPHYT_RS18500: hypothetical protein
is similar to:
PaperBLAST

W5PYW4: 1-piperideine-2-carboxylate/1-pyrroline-2-carboxylate reductase (NADPH) (EC 1.5.1.21) from Ovis aries

36% id,
68% cov

Q9QYU4: 1-piperideine-2-carboxylate/1-pyrroline-2-carboxylate reductase (NADPH) (EC 1.5.1.21) from Rattus norvegicus

36% id,
68% cov

O54983: 1-piperideine-2-carboxylate/1-pyrroline-2-carboxylate reductase (NADPH) (EC 1.5.1.21) from Mus musculus

35% id,
68% cov

More...

BPHYT_RS10280: ornithine cyclodeaminase
is similar to:
PaperBLAST

O54983: 1-piperideine-2-carboxylate/1-pyrroline-2-carboxylate reductase (NADPH) (EC 1.5.1.21) from Mus musculus

25% id,
96% cov

Q9QYU4: 1-piperideine-2-carboxylate/1-pyrroline-2-carboxylate reductase (NADPH) (EC 1.5.1.21) from Rattus norvegicus

26% id,
85% cov

B1GT63: Strombine dehydrogenase (EC 1.5.1.22) from Suberites domuncula

25% id,
84% cov

BPHYT_RS35420: alanine dehydrogenase
is similar to:
PaperBLAST

CEO2_LACLL / P15244: N(5)-(carboxyethyl)ornithine synthase; CEOS; N(5)-(L-1-carboxyethyl)-L-ornithine:NADP(+) oxidoreductase; EC 1.5.1.24 from Lactococcus lactis
ceo / GB|AAA86385.1: N(5)-(carboxyethyl)ornithine synthase; EC 1.5.1.24 from Lactococcus lactis

26% id,
93% cov

BPHYT_RS02310: 5-methyltetrahydrofolate--homocysteine methyltransferase
is similar to:
PaperBLAST

YITJ_BACSU / O06745: Bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase; EC 2.1.1.10; EC 1.5.1.20 from Bacillus subtilis

30% id,
46% cov

BPHYT_RS08410: dehydrogenase
is similar to:
PaperBLAST

STORR_PAPSO / P0DKI7: Bifunctional protein STORR; (S)- to (R)-reticuline; EC 1.14.19.54; EC 1.5.1.27 from Papaver somniferum
P0DKI7: 1,2-dehydroreticuline synthase (EC 1.14.19.54); 1,2-dehydroreticulinium reductase (NADPH) (EC 1.5.1.27) from Papaver somniferum

33% id,
31% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 11 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory