Curated BLAST for Genomes

 

Curated BLAST

Searching in Burkholderia phytofirmans PsJN (BFirm)

Found 7 curated entries in PaperBLAST's database that match '1.5.3.7'.

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 13 relevant proteins in Burkholderia phytofirmans PsJN, or try another query

BPHYT_RS13575: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

amaA / Q88CC4: pipecolate oxidase (EC 1.5.3.7) from Pseudomonas putida

36% id,
95% cov

BPHYT_RS22700: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

amaA / Q88CC4: pipecolate oxidase (EC 1.5.3.7) from Pseudomonas putida

30% id,
90% cov

BPHYT_RS30200: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

amaA / Q88CC4: pipecolate oxidase (EC 1.5.3.7) from Pseudomonas putida

30% id,
90% cov

BPHYT_RS23125: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

amaA / Q88CC4: pipecolate oxidase (EC 1.5.3.7) from Pseudomonas putida

31% id,
86% cov

BPHYT_RS21990: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

SOX_HUMAN / Q9P0Z9: Peroxisomal sarcosine oxidase; PSO; L-pipecolate oxidase; L-pipecolic acid oxidase; EC 1.5.3.1; EC 1.5.3.7 from Homo sapiens
Q9P0Z9: L-pipecolate oxidase (EC 1.5.3.7) from Homo sapiens

26% id,
98% cov

PIPOX / Q8N6Z6: L-pipecolate oxidase (EC 1.5.3.7) from Homo sapiens

26% id,
98% cov

BPHYT_RS30495: oxidoreductase
is similar to:
PaperBLAST

amaA / Q88CC4: pipecolate oxidase (EC 1.5.3.7) from Pseudomonas putida

26% id,
96% cov

BPHYT_RS01330: FAD dependent oxidoreductase
is similar to:
PaperBLAST

PIPOX / Q8N6Z6: L-pipecolate oxidase (EC 1.5.3.7) from Homo sapiens

25% id,
97% cov

SOX_HUMAN / Q9P0Z9: Peroxisomal sarcosine oxidase; PSO; L-pipecolate oxidase; L-pipecolic acid oxidase; EC 1.5.3.1; EC 1.5.3.7 from Homo sapiens
Q9P0Z9: L-pipecolate oxidase (EC 1.5.3.7) from Homo sapiens

24% id,
97% cov

amaA / Q88CC4: pipecolate oxidase (EC 1.5.3.7) from Pseudomonas putida

26% id,
65% cov

More...

BPHYT_RS07480: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

amaA / Q88CC4: pipecolate oxidase (EC 1.5.3.7) from Pseudomonas putida

28% id,
85% cov

BPHYT_RS24765: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

SOX_HUMAN / Q9P0Z9: Peroxisomal sarcosine oxidase; PSO; L-pipecolate oxidase; L-pipecolic acid oxidase; EC 1.5.3.1; EC 1.5.3.7 from Homo sapiens
Q9P0Z9: L-pipecolate oxidase (EC 1.5.3.7) from Homo sapiens

24% id,
96% cov

PIPOX / Q8N6Z6: L-pipecolate oxidase (EC 1.5.3.7) from Homo sapiens

24% id,
96% cov

BPHYT_RS30165: sarcosine oxidase subunit beta
is similar to:
PaperBLAST

amaA / Q88CC4: pipecolate oxidase (EC 1.5.3.7) from Pseudomonas putida

25% id,
90% cov

BPHYT_RS32315: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

amaA / Q88CC4: pipecolate oxidase (EC 1.5.3.7) from Pseudomonas putida

25% id,
84% cov

BPHYT_RS35025: sarcosine oxidase
is similar to:
PaperBLAST

SOX_HUMAN / Q9P0Z9: Peroxisomal sarcosine oxidase; PSO; L-pipecolate oxidase; L-pipecolic acid oxidase; EC 1.5.3.1; EC 1.5.3.7 from Homo sapiens
Q9P0Z9: L-pipecolate oxidase (EC 1.5.3.7) from Homo sapiens

28% id,
56% cov

PIPOX / Q8N6Z6: L-pipecolate oxidase (EC 1.5.3.7) from Homo sapiens

27% id,
56% cov

BPHYT_RS29290: D-amino acid oxidase
is similar to:
PaperBLAST

SOX_HUMAN / Q9P0Z9: Peroxisomal sarcosine oxidase; PSO; L-pipecolate oxidase; L-pipecolic acid oxidase; EC 1.5.3.1; EC 1.5.3.7 from Homo sapiens
Q9P0Z9: L-pipecolate oxidase (EC 1.5.3.7) from Homo sapiens

30% id,
27% cov

PIPOX / Q8N6Z6: L-pipecolate oxidase (EC 1.5.3.7) from Homo sapiens

35% id,
15% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 12 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory