Curated BLAST for Genomes

 

Curated BLAST

Searching in Burkholderia phytofirmans PsJN (BFirm)

Found 22 curated entries in PaperBLAST's database that match '2.3.3.14' as complete word(s).

These curated entries have 14 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Burkholderia phytofirmans PsJN, or try another query

BPHYT_RS06570: 2-isopropylmalate synthase
is similar to:
PaperBLAST

D0VY45: homocitrate synthase (EC 2.3.3.14) from Lotus japonicus

44% id,
94% cov

AKSA_METJA / Q57926: Homocitrate synthase AksA; (R)-homo(2)citrate synthase; (R)-homo(3)citrate synthase; EC 2.3.3.14; EC 2.3.3.- from Methanocaldococcus jannaschii

41% id,
90% cov

P58637: homocitrate synthase (EC 2.3.3.14) from Nostoc sp.

36% id,
99% cov

More...

BPHYT_RS13280: 2-isopropylmalate synthase
is similar to:
PaperBLAST

D0VY45: homocitrate synthase (EC 2.3.3.14) from Lotus japonicus

25% id,
94% cov

AKSA_METJA / Q57926: Homocitrate synthase AksA; (R)-homo(2)citrate synthase; (R)-homo(3)citrate synthase; EC 2.3.3.14; EC 2.3.3.- from Methanocaldococcus jannaschii

26% id,
89% cov

A0A0S6UXF5: homocitrate synthase (EC 2.3.3.14) from Bradyrhizobium sp.

29% id,
50% cov

More...

BPHYT_RS02790: hypothetical protein
is similar to:
PaperBLAST

AKSA_METJA / Q57926: Homocitrate synthase AksA; (R)-homo(2)citrate synthase; (R)-homo(3)citrate synthase; EC 2.3.3.14; EC 2.3.3.- from Methanocaldococcus jannaschii

26% id,
74% cov

D0VY45: homocitrate synthase (EC 2.3.3.14) from Lotus japonicus

26% id,
57% cov

HOSA_SULAC / Q4J989: Homocitrate synthase; HCS; EC 2.3.3.14 from Sulfolobus acidocaldarius
Q4J989: homocitrate synthase (EC 2.3.3.14) from Sulfolobus acidocaldarius

24% id,
61% cov

More...

BPHYT_RS03930: 3-hydroxy-3-methylglutaryl-CoA lyase
is similar to:
PaperBLAST

HOSA_THET2 / O87198: Homocitrate synthase; HCS; EC 2.3.3.14 from Thermus thermophilus
hcs / O87198: homocitrate synthase (EC 2.3.3.14) from Thermus thermophilus

27% id,
69% cov

AKSA_METJA / Q57926: Homocitrate synthase AksA; (R)-homo(2)citrate synthase; (R)-homo(3)citrate synthase; EC 2.3.3.14; EC 2.3.3.- from Methanocaldococcus jannaschii

24% id,
63% cov

C7C437: homocitrate synthase (EC 2.3.3.14) from Aspergillus fumigatus

25% id,
58% cov

More...

BPHYT_RS34520: hydroxymethylglutaryl-CoA lyase
is similar to:
PaperBLAST

AKSA_METJA / Q57926: Homocitrate synthase AksA; (R)-homo(2)citrate synthase; (R)-homo(3)citrate synthase; EC 2.3.3.14; EC 2.3.3.- from Methanocaldococcus jannaschii

22% id,
66% cov

HOSC_YEAST / P48570: Homocitrate synthase, cytosolic isozyme; HCS; EC 2.3.3.14 from Saccharomyces cerevisiae
LYS20 / P48570: homocitrate synthase (EC 2.3.3.14) from Saccharomyces cerevisiae
P48570: homocitrate synthase (EC 2.3.3.14) from Saccharomyces cerevisiae

27% id,
50% cov

HOSM_YEAST / Q12122: Homocitrate synthase, mitochondrial; HCS; EC 2.3.3.14 from Saccharomyces cerevisiae
LYS21 / Q12122: homocitrate synthase (EC 2.3.3.14) from Saccharomyces cerevisiae
Q12122: homocitrate synthase (EC 2.3.3.14) from Saccharomyces cerevisiae

27% id,
48% cov

More...

BPHYT_RS02130: hydroxymethylglutaryl-CoA lyase
is similar to:
PaperBLAST

HOSA_SULAC / Q4J989: Homocitrate synthase; HCS; EC 2.3.3.14 from Sulfolobus acidocaldarius
Q4J989: homocitrate synthase (EC 2.3.3.14) from Sulfolobus acidocaldarius

29% id,
50% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1490787-1492511 (frame +3) on NC_010681
is similar to:
PaperBLAST

D0VY45: homocitrate synthase (EC 2.3.3.14) from Lotus japonicus
Also see hits to annotated proteins above

43% id,
99% cov

HOSM_SCHPO / Q9Y823: Homocitrate synthase, mitochondrial; HCS; EC 2.3.3.14 from Schizosaccharomyces pombe
lys4 / RF|NP_596458.1: homocitrate synthase (predicted); EC 2.3.3.14 from Schizosaccharomyces pombe
Also see hits to annotated proteins above

29% id,
93% cov

C7C437: homocitrate synthase (EC 2.3.3.14) from Aspergillus fumigatus
Also see hits to annotated proteins above

27% id,
98% cov

More...

888434-889540 (frame +2) on NC_010681
is similar to:
PaperBLAST

C7C437: homocitrate synthase (EC 2.3.3.14) from Aspergillus fumigatus
Also see hits to annotated proteins above

25% id,
65% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory