Curated BLAST for Genomes

 

Curated BLAST

Searching in Burkholderia phytofirmans PsJN (BFirm)

Found 35 curated entries in PaperBLAST's database that match '2.3.3.9' as complete word(s).

These curated entries have 22 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Burkholderia phytofirmans PsJN, or try another query

BPHYT_RS12305: malate synthase
is similar to:
PaperBLAST

BPHYT_RS12305: Malate synthase (EC 2.3.3.9) from Burkholderia phytofirmans

100% id,
100% cov

Q9ZH77: malate synthase (EC 2.3.3.9) from Streptomyces clavuligerus

54% id,
98% cov

Q5YLB8: malate synthase (EC 2.3.3.9) from Paracoccidioides brasiliensis

56% id,
94% cov

More...

BPHYT_RS31665: malate synthase
is similar to:
PaperBLAST

Psest_0354: Malate synthase G (EC 2.3.3.9) from Pseudomonas stutzeri

65% id,
100% cov

MASZ_ECOLI / P37330: Malate synthase G; MSG; EC 2.3.3.9 from Escherichia coli
Glc / b2976: malate synthase G (EC 2.3.3.9) from Escherichia coli
glcB / P37330: malate synthase G (EC 2.3.3.9) from Escherichia coli

64% id,
100% cov

MASZ_MYCLB / B8ZSN3: Malate synthase G; EC 2.3.3.9 from Mycobacterium leprae

60% id,
100% cov

More...

BPHYT_RS09815: malate synthase
is similar to:
PaperBLAST

Psest_0354: Malate synthase G (EC 2.3.3.9) from Pseudomonas stutzeri

65% id,
100% cov

MASZ_ECOLI / P37330: Malate synthase G; MSG; EC 2.3.3.9 from Escherichia coli
Glc / b2976: malate synthase G (EC 2.3.3.9) from Escherichia coli
glcB / P37330: malate synthase G (EC 2.3.3.9) from Escherichia coli

64% id,
100% cov

MASZ_MYCLB / B8ZSN3: Malate synthase G; EC 2.3.3.9 from Mycobacterium leprae

60% id,
100% cov

More...

BPHYT_RS12285: isocitrate lyase
is similar to:
PaperBLAST

GCP_CAEEL / Q10663: Bifunctional glyoxylate cycle protein; Gex-3-interacting protein 7; EC 4.1.3.1; EC 2.3.3.9 from Caenorhabditis elegans

61% id,
44% cov

BPHYT_RS26855: carboxyvinyl-carboxyphosphonate phosphorylmutase
is similar to:
PaperBLAST

GCP_CAEEL / Q10663: Bifunctional glyoxylate cycle protein; Gex-3-interacting protein 7; EC 4.1.3.1; EC 2.3.3.9 from Caenorhabditis elegans

34% id,
14% cov

BPHYT_RS25670: carboxyvinyl-carboxyphosphonate phosphorylmutase
is similar to:
PaperBLAST

GCP_CAEEL / Q10663: Bifunctional glyoxylate cycle protein; Gex-3-interacting protein 7; EC 4.1.3.1; EC 2.3.3.9 from Caenorhabditis elegans

41% id,
9% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory