Curated BLAST for Genomes

 

Curated BLAST

Searching in Burkholderia phytofirmans PsJN (BFirm)

Found 65 curated entries in PaperBLAST's database that match '2.4.2.4'.

These curated entries have 39 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Burkholderia phytofirmans PsJN, or try another query

BPHYT_RS08940: 4-amino-4-deoxy-L-arabinose transferase
is similar to:
PaperBLAST

ABF11690.1: 4-amino-4-deoxy-L-arabinosyltransferase (ArnT;ArnTCm;Rmet_4828) (EC 2.4.2.43) from

42% id,
93% cov

ARNT_SALTY / O52327: Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase; 4-amino-4-deoxy-L-arabinose lipid A transferase; Lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase; Polymyxin resistance protein PmrK; Undecaprenyl phosphate-alpha-L-Ara4N transferase; EC 2.4.2.43 from Salmonella typhimurium
O52327: lipid IVA 4-amino-4-deoxy-L-arabinosyltransferase (EC 2.4.2.43) from Salmonella enterica

27% id,
91% cov

AAL34393.1: 4-amino-4-deoxy-L-arabinotransferase (ArnT) (EC 2.4.2.43) from

27% id,
91% cov

More...

BPHYT_RS04365: membrane protein
is similar to:
PaperBLAST

DPPRS_MYCTU / P9WFR5: Decaprenyl-phosphate phosphoribosyltransferase; 5-phospho-alpha-D-ribose-1-diphosphate:decaprenyl-phosphate 5-phosphoribosyltransferase; DPPR synthase; EC 2.4.2.45 from Mycobacterium tuberculosis
ubiA / P9WFR5: DPPR synthase (EC 2.4.2.45) from Mycobacterium tuberculosis
P9WFR5: decaprenyl-phosphate phosphoribosyltransferase (EC 2.4.2.45) from Mycobacterium tuberculosis

30% id,
97% cov

DPPRS_MYCS2 / A0R626: Decaprenyl-phosphate phosphoribosyltransferase; 5-phospho-alpha-D-ribose-1-diphosphate:decaprenyl-phosphate 5-phosphoribosyltransferase; DPPR synthase; EC 2.4.2.45 from Mycolicibacterium smegmatis

30% id,
94% cov

DPPRS_CORGL / Q8NLQ9: Decaprenyl-phosphate phosphoribosyltransferase; 5-phospho-alpha-D-ribose-1-diphosphate:decaprenyl-phosphate 5-phosphoribosyltransferase; DPPR synthase; EC 2.4.2.45 from Corynebacterium glutamicum

29% id,
74% cov

BPHYT_RS03410: queuine tRNA-ribosyltransferase
is similar to:
PaperBLAST

Q8THU2: tRNA-guanosine34 transglycosylase (subunit 2/2) (EC 2.4.2.29); tRNA-guanine15 transglycosylase (EC 2.4.2.48) from Methanosarcina acetivorans

26% id,
67% cov

ATGT_HALVD / Q9C4M3: tRNA-guanine(15) transglycosylase; 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Archaeal tRNA-guanine transglycosylase; EC 2.4.2.48 from Haloferax volcanii
Q9C4M3: tRNA-guanine15 transglycosylase (EC 2.4.2.48) from Haloferax volcanii

25% id,
66% cov

ATGT_PYRHO / O58843: tRNA-guanine(15) transglycosylase; 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Archaeal tRNA-guanine transglycosylase; EC 2.4.2.48 from Pyrococcus horikoshii
O58843: tRNA-guanine15 transglycosylase (EC 2.4.2.48) from Pyrococcus horikoshii

25% id,
58% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory