Curated BLAST for Genomes

 

Curated BLAST

Searching in Burkholderia phytofirmans PsJN (BFirm)

Found 20 curated entries in PaperBLAST's database that match '2.5.1.48' as complete word(s).

These curated entries have 15 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Burkholderia phytofirmans PsJN, or try another query

BPHYT_RS33835: O-succinylhomoserine sulfhydrylase
is similar to:
PaperBLAST

metZ / P55218: O-succinyl-L-homoserine sulfhydrylase (EC 2.5.1.48) from Pseudomonas aeruginosa

56% id,
98% cov

METB_ECOLI / P00935: Cystathionine gamma-synthase; CGS; O-succinylhomoserine (thiol)-lyase; EC 2.5.1.48 from Escherichia coli
MetB / b3939: O-succinylhomoserine(thiol)-lyase / O-succinylhomoserine lyase (EC 2.5.1.48) from Escherichia coli
metB / P00935: O-succinylhomoserine(thiol)-lyase / O-succinylhomoserine lyase (EC 2.5.1.48) from Escherichia coli

38% id,
97% cov

metB / P56069: cystathionine γ-lyase (EC 2.5.1.48) from Helicobacter pylori

38% id,
94% cov

More...

BPHYT_RS13720: O-acetylhomoserine aminocarboxypropyltransferase
is similar to:
PaperBLAST

metZ / P55218: O-succinyl-L-homoserine sulfhydrylase (EC 2.5.1.48) from Pseudomonas aeruginosa

39% id,
95% cov

HSERO_RS16440: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) from Herbaspirillum seropedicae

37% id,
98% cov

METB_HELPX / Q1M0P5: Cystathionine gamma-synthase; CGS; O-succinylhomoserine (thiol)-lyase; EC 2.5.1.48 from Helicobacter pylori
Q1M0P5: cystathionine gamma-synthase (EC 2.5.1.48) from Helicobacter pylori

36% id,
99% cov

More...

BPHYT_RS09190: cystathionine beta-lyase
is similar to:
PaperBLAST

METB_MYCTU / P9WGB7: Cystathionine gamma-synthase; CGS; O-succinylhomoserine (thiol)-lyase; EC 2.5.1.48 from Mycobacterium tuberculosis

31% id,
96% cov

metZ / P55218: O-succinyl-L-homoserine sulfhydrylase (EC 2.5.1.48) from Pseudomonas aeruginosa

29% id,
100% cov

METB_HELPX / Q1M0P5: Cystathionine gamma-synthase; CGS; O-succinylhomoserine (thiol)-lyase; EC 2.5.1.48 from Helicobacter pylori
Q1M0P5: cystathionine gamma-synthase (EC 2.5.1.48) from Helicobacter pylori

29% id,
99% cov

More...

BPHYT_RS33890: fimbrial protein FimV
is similar to:
PaperBLAST

CGS1_ARATH / P55217: Cystathionine gamma-synthase 1, chloroplastic; AtCGS1; METHIONINE OVERACCUMULATION 1; O-succinylhomoserine (thiol)-lyase; EC 2.5.1.48 from Arabidopsis thaliana
CGS1 / P55217: cystathionine γ-synthase (EC 2.5.1.48) from Arabidopsis thaliana

29% id,
31% cov

BPHYT_RS12780: cysteine desulfurase
is similar to:
PaperBLAST

Ac3H11_2452: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) from Acidovorax sp.

33% id,
21% cov

HSERO_RS16440: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) from Herbaspirillum seropedicae

31% id,
14% cov

BPHYT_RS12835: dihydrolipoamide acetyltransferase
is similar to:
PaperBLAST

CGS1_ARATH / P55217: Cystathionine gamma-synthase 1, chloroplastic; AtCGS1; METHIONINE OVERACCUMULATION 1; O-succinylhomoserine (thiol)-lyase; EC 2.5.1.48 from Arabidopsis thaliana
CGS1 / P55217: cystathionine γ-synthase (EC 2.5.1.48) from Arabidopsis thaliana

27% id,
20% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory