Curated BLAST for Genomes

 

Curated BLAST

Searching in Burkholderia phytofirmans PsJN (BFirm)

Found 25 curated entries in PaperBLAST's database that match '2.7.1.17' as complete word(s).

These curated entries have 20 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Burkholderia phytofirmans PsJN, or try another query

BPHYT_RS16080: xylulokinase
is similar to:
PaperBLAST

XYLB_ECOLI / P09099: Xylulose kinase; XK; Xylulokinase; 1-deoxy-D-xylulokinase; EC 2.7.1.17; EC 2.7.1.- from Escherichia coli
XylB / b3564: xylulokinase (EC 2.7.1.17) from Escherichia coli
xylB / GB|AAC76588.1: xylulokinase; EC 2.7.1.17 from Escherichia coli
xylB / P09099: xylulokinase (EC 2.7.1.17) from Escherichia coli

54% id,
100% cov

BWI76_RS27020: Xylulose kinase (EC 2.7.1.17) from Klebsiella michiganensis

53% id,
100% cov

Dshi_1997: Xylulose kinase (EC 2.7.1.17) from Dinoroseobacter shibae

52% id,
100% cov

More...

BPHYT_RS16155: carbohydrate kinase
is similar to:
PaperBLAST

SMc03164: Xylulose kinase (EC 2.7.1.17) from Sinorhizobium meliloti

33% id,
99% cov

Dshi_1997: Xylulose kinase (EC 2.7.1.17) from Dinoroseobacter shibae

35% id,
93% cov

PGA1_c14010: Xylulose kinase (EC 2.7.1.17) from Phaeobacter inhibens

33% id,
97% cov

More...

BPHYT_RS16045: actin
is similar to:
PaperBLAST

BWI76_RS27020: Xylulose kinase (EC 2.7.1.17) from Klebsiella michiganensis

32% id,
99% cov

Dshi_1997: Xylulose kinase (EC 2.7.1.17) from Dinoroseobacter shibae

32% id,
99% cov

SMc03164: Xylulose kinase (EC 2.7.1.17) from Sinorhizobium meliloti

31% id,
99% cov

More...

BPHYT_RS16495: glycerol kinase
is similar to:
PaperBLAST

Q9WXX1: xylulokinase (EC 2.7.1.17) from Thermotoga maritima

26% id,
96% cov

PGA1_c14010: Xylulose kinase (EC 2.7.1.17) from Phaeobacter inhibens

26% id,
91% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory