Curated BLAST for Genomes


Curated BLAST

Searching in Burkholderia phytofirmans PsJN (BFirm)

Found 17 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Burkholderia phytofirmans PsJN, or try another query

BPHYT_RS33645: homoserine kinase
is similar to:

KHSE_PSEAE / P29364: Homoserine kinase; HK; HSK; EC from Pseudomonas aeruginosa

41% id,
99% cov

Ga0059261_3253: homoserine kinase (EC from Sphingomonas koreensis

30% id,
97% cov

BPHYT_RS17890: shikimate kinase
is similar to:

thrB / B8DPL9: homoserine kinase (EC from Desulfovibrio vulgaris
DvMF_0971: Homoserine kinase (EC: from Desulfovibrio vulgaris

33% id,
86% cov

BPHYT_RS02855: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
is similar to:

thrB / Q58504: homoserine kinase monomer (EC from Methanocaldococcus jannaschii

25% id,
79% cov

CA265_RS23470: homoserine kinase (EC from Pedobacter sp.

26% id,
66% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory