Curated BLAST for Genomes


Curated BLAST

Searching in Burkholderia phytofirmans PsJN (BFirm)

Found 529 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 444 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Burkholderia phytofirmans PsJN, or try another query

BPHYT_RS29195: beta-glucosidase
is similar to:

ABR73190.1: β-glucosidase (BglM1;Mmwyl1_4295) (cold-active) (EC

55% id,
100% cov

ABU56651.1: Rcas_0521 (EC

56% id,
94% cov

ADD27066.1: Mrub_0288 (EC

53% id,
98% cov


BPHYT_RS09000: competence protein ComE
is similar to:

psu1 / RF|NP_593500.1: cell wall protein Psu1, beta-glucosidase (predicted); EC from Schizosaccharomyces pombe

27% id,
37% cov

BPHYT_RS08325: glucose dehydrogenase
is similar to:

BTGE_EMENI / Q5BD29: Probable beta-glucosidase btgE; Beta-D-glucoside glucohydrolase btgE; Cellobiase btgE; Gentiobiase btgE; EC from Emericella nidulans

34% id,
10% cov

BPHYT_RS22140: hypothetical protein
is similar to:

bglD: probable beta-glucosidase D; EC from Emericella nidulans

38% id,
9% cov

bglD: probable beta-glucosidase D; EC from Emericella nidulans

35% id,
9% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3275461-3276555 (frame -1) on NC_010681
is similar to:

NAG3_CELFI / Q7WUL3: Beta-N-acetylglucosaminidase/beta-glucosidase; 3-beta-N-acetyl-D-glucosaminidase/beta-D-glucosidase; Nag3; EC; EC from Cellulomonas fimi
AAQ05801.1: bifunctional N-acetyl-β-glucosaminidase/β-glucosidase (Nag3) (acts as a phosphorylase in presence of phosphate) (Nag3A) (EC||2.4.1.-)

28% id,
47% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory