Curated BLAST for Genomes

 

Curated BLAST

Searching in Burkholderia phytofirmans PsJN (BFirm)

Found 12 curated entries in PaperBLAST's database that match '3.5.1.94'.

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Burkholderia phytofirmans PsJN, or try another query

BPHYT_RS23165: glutamine amidotransferase
is similar to:
PaperBLAST

SO1267: Gamma-glutamyl-gamma-aminobutyrate hydrolase (EC 3.5.1.94) from Shewanella oneidensis

60% id,
98% cov

AO353_29305: Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) from Pseudomonas fluorescens

56% id,
97% cov

Sama_2645: Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) from Shewanella amazonensis

55% id,
97% cov

More...

BPHYT_RS15045: peptidase C26
is similar to:
PaperBLAST

AO353_29305: Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) from Pseudomonas fluorescens

32% id,
90% cov

Pf6N2E2_4510: Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) from Pseudomonas fluorescens

38% id,
76% cov

AO356_13140: Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) from Pseudomonas fluorescens

37% id,
76% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory