Curated BLAST for Genomes

 

Curated BLAST

Searching in Burkholderia phytofirmans PsJN (BFirm)

Found 4 curated entries in PaperBLAST's database that match '3.5.99.5' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 19 relevant proteins in Burkholderia phytofirmans PsJN, or try another query

BPHYT_RS07260: 2-aminomuconate deaminase
is similar to:
PaperBLAST

nbaF / Q83V27: 2-aminomuconate deaminase (EC 3.5.99.5) from Pseudomonas fluorescens

70% id,
95% cov

AMND_PSESP / Q9KWS2: 2-aminomuconate deaminase; EC 3.5.99.5 from Pseudomonas sp.
amnD / Q9KWS2: 2-aminomuconate deaminase monomer (EC 3.5.99.5) from Pseudomonas sp.

65% id,
99% cov

BPHYT_RS15070: amidase
is similar to:
PaperBLAST

CNBH_COMTE / Q38M35: 2-amino-5-chloromuconic acid deaminase; 2-aminomuconate deaminase; EC 3.5.99.5 from Comamonas testosteroni

39% id,
96% cov

BPHYT_RS28340: indole acetimide hydrolase
is similar to:
PaperBLAST

CNBH_COMTE / Q38M35: 2-amino-5-chloromuconic acid deaminase; 2-aminomuconate deaminase; EC 3.5.99.5 from Comamonas testosteroni

31% id,
99% cov

BPHYT_RS00720: amidase
is similar to:
PaperBLAST

CNBH_COMTE / Q38M35: 2-amino-5-chloromuconic acid deaminase; 2-aminomuconate deaminase; EC 3.5.99.5 from Comamonas testosteroni

31% id,
99% cov

BPHYT_RS29965: amidase
is similar to:
PaperBLAST

CNBH_COMTE / Q38M35: 2-amino-5-chloromuconic acid deaminase; 2-aminomuconate deaminase; EC 3.5.99.5 from Comamonas testosteroni

31% id,
97% cov

BPHYT_RS00200: amidase
is similar to:
PaperBLAST

CNBH_COMTE / Q38M35: 2-amino-5-chloromuconic acid deaminase; 2-aminomuconate deaminase; EC 3.5.99.5 from Comamonas testosteroni

31% id,
97% cov

BPHYT_RS29300: endoribonuclease L-PSP
is similar to:
PaperBLAST

AMND_PSESP / Q9KWS2: 2-aminomuconate deaminase; EC 3.5.99.5 from Pseudomonas sp.
amnD / Q9KWS2: 2-aminomuconate deaminase monomer (EC 3.5.99.5) from Pseudomonas sp.

33% id,
89% cov

nbaF / Q83V27: 2-aminomuconate deaminase (EC 3.5.99.5) from Pseudomonas fluorescens

31% id,
88% cov

BPHYT_RS26060: allophanate hydrolase
is similar to:
PaperBLAST

CNBH_COMTE / Q38M35: 2-amino-5-chloromuconic acid deaminase; 2-aminomuconate deaminase; EC 3.5.99.5 from Comamonas testosteroni

32% id,
91% cov

BPHYT_RS01555: glutamyl-tRNA(Gln) amidotransferase subunit A
is similar to:
PaperBLAST

CNBH_COMTE / Q38M35: 2-amino-5-chloromuconic acid deaminase; 2-aminomuconate deaminase; EC 3.5.99.5 from Comamonas testosteroni

30% id,
94% cov

BPHYT_RS25970: urea amidolyase
is similar to:
PaperBLAST

CNBH_COMTE / Q38M35: 2-amino-5-chloromuconic acid deaminase; 2-aminomuconate deaminase; EC 3.5.99.5 from Comamonas testosteroni

29% id,
95% cov

BPHYT_RS03130: hypothetical protein
is similar to:
PaperBLAST

AMND_PSESP / Q9KWS2: 2-aminomuconate deaminase; EC 3.5.99.5 from Pseudomonas sp.
amnD / Q9KWS2: 2-aminomuconate deaminase monomer (EC 3.5.99.5) from Pseudomonas sp.

30% id,
91% cov

BPHYT_RS00680: amidase
is similar to:
PaperBLAST

CNBH_COMTE / Q38M35: 2-amino-5-chloromuconic acid deaminase; 2-aminomuconate deaminase; EC 3.5.99.5 from Comamonas testosteroni

29% id,
90% cov

BPHYT_RS10730: Glu-tRNA amidotransferase
is similar to:
PaperBLAST

CNBH_COMTE / Q38M35: 2-amino-5-chloromuconic acid deaminase; 2-aminomuconate deaminase; EC 3.5.99.5 from Comamonas testosteroni

31% id,
82% cov

BPHYT_RS26095: amidase
is similar to:
PaperBLAST

CNBH_COMTE / Q38M35: 2-amino-5-chloromuconic acid deaminase; 2-aminomuconate deaminase; EC 3.5.99.5 from Comamonas testosteroni

30% id,
85% cov

BPHYT_RS10765: amidase
is similar to:
PaperBLAST

CNBH_COMTE / Q38M35: 2-amino-5-chloromuconic acid deaminase; 2-aminomuconate deaminase; EC 3.5.99.5 from Comamonas testosteroni

27% id,
94% cov

BPHYT_RS31780: indoleacetamide hydrolase
is similar to:
PaperBLAST

CNBH_COMTE / Q38M35: 2-amino-5-chloromuconic acid deaminase; 2-aminomuconate deaminase; EC 3.5.99.5 from Comamonas testosteroni

34% id,
61% cov

BPHYT_RS28525: amidase
is similar to:
PaperBLAST

CNBH_COMTE / Q38M35: 2-amino-5-chloromuconic acid deaminase; 2-aminomuconate deaminase; EC 3.5.99.5 from Comamonas testosteroni

31% id,
62% cov

BPHYT_RS10240: translation initiation inhibitor
is similar to:
PaperBLAST

AMND_PSESP / Q9KWS2: 2-aminomuconate deaminase; EC 3.5.99.5 from Pseudomonas sp.
amnD / Q9KWS2: 2-aminomuconate deaminase monomer (EC 3.5.99.5) from Pseudomonas sp.

35% id,
55% cov

BPHYT_RS01870: 6-aminohexanoate-cyclic-dimer hydrolase
is similar to:
PaperBLAST

CNBH_COMTE / Q38M35: 2-amino-5-chloromuconic acid deaminase; 2-aminomuconate deaminase; EC 3.5.99.5 from Comamonas testosteroni

30% id,
58% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 19 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory