Curated BLAST for Genomes

 

Curated BLAST

Searching in Burkholderia phytofirmans PsJN (BFirm)

Found 15 curated entries in PaperBLAST's database that match '3.7.1.2' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Burkholderia phytofirmans PsJN, or try another query

BPHYT_RS02335: fumarylacetoacetate hydrolase
is similar to:
PaperBLAST

Psest_3512: fumarylacetoacetate (FAA) hydrolase (EC 3.7.1.2) from Pseudomonas stutzeri

63% id,
98% cov

SO1670: fumarylacetoacetate hydrolase (EC 3.7.1.2) from Shewanella oneidensis

62% id,
99% cov

BPHYT_RS03805: fumarylacetoacetase
is similar to:
PaperBLAST

FAAA_MOUSE / P35505: Fumarylacetoacetase; FAA; Beta-diketonase; Fumarylacetoacetate hydrolase; EC 3.7.1.2 from Mus musculus
P35505: fumarylacetoacetase (EC 3.7.1.2) from Mus musculus

58% id,
99% cov

FAAA_RAT / P25093: Fumarylacetoacetase; FAA; Beta-diketonase; Fumarylacetoacetate hydrolase; EC 3.7.1.2 from Rattus norvegicus

57% id,
99% cov

FAAA_HUMAN / P16930: Fumarylacetoacetase; FAA; Beta-diketonase; Fumarylacetoacetate hydrolase; EC 3.7.1.2 from Homo sapiens
FAH / P16930: Fumarylacetoacetase (EC 3.7.1.2) from Homo sapiens

57% id,
99% cov

More...

BPHYT_RS11790: fumarylacetoacetase
is similar to:
PaperBLAST

FAH_ARATH / Q8RW90: Fumarylacetoacetase; Fumarylacetoacetate hydrolase; AtFAH; Protein SHORT-DAY SENSITIVE CELL DEATH 1; EC 3.7.1.2 from Arabidopsis thaliana
Q8RW90: fumarylacetoacetase (EC 3.7.1.2) from Arabidopsis thaliana

45% id,
96% cov

FAAA_CAEEL / Q94272: Fumarylacetoacetase; FAA; Beta-diketonase; Fumarylacetoacetate hydrolase; EC 3.7.1.2 from Caenorhabditis elegans
Q94272: fumarylacetoacetase (EC 3.7.1.2) from Caenorhabditis elegans

44% id,
97% cov

FAAA_HUMAN / P16930: Fumarylacetoacetase; FAA; Beta-diketonase; Fumarylacetoacetate hydrolase; EC 3.7.1.2 from Homo sapiens
FAH / P16930: Fumarylacetoacetase (EC 3.7.1.2) from Homo sapiens

42% id,
98% cov

More...

BPHYT_RS28740: 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase
is similar to:
PaperBLAST

A0A076VF18: fumarylacetoacetase (EC 3.7.1.2) from Rhodotorula diobovata

35% id,
90% cov

BPHYT_RS34210: ureidoglycolate lyase
is similar to:
PaperBLAST

A0A076VF18: fumarylacetoacetase (EC 3.7.1.2) from Rhodotorula diobovata

36% id,
85% cov

BPHYT_RS07330: 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase
is similar to:
PaperBLAST

A0A076VF18: fumarylacetoacetase (EC 3.7.1.2) from Rhodotorula diobovata

31% id,
85% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory