Curated BLAST for Genomes

 

Curated BLAST

Searching in Burkholderia phytofirmans PsJN (BFirm)

Found 47 curated entries in PaperBLAST's database that match '4.1.1.17' as complete word(s).

These curated entries have 34 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Burkholderia phytofirmans PsJN, or try another query

BPHYT_RS04980: lysine decarboxylase
is similar to:
PaperBLAST

Q5ZH57: ornithine decarboxylase (EC 4.1.1.17) from Oenococcus oeni

36% id,
93% cov

H8ZI01: ornithine decarboxylase (EC 4.1.1.17) from Lactobacillus brevis

34% id,
94% cov

SpeC / b2965: constitutive ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli
speC / P21169: constitutive ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli
P21169: ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli

33% id,
95% cov

More...

BPHYT_RS17930: diaminopimelate decarboxylase
is similar to:
PaperBLAST

G4XUJ8: ornithine decarboxylase (EC 4.1.1.17) from Erythroxylum coca

26% id,
86% cov

DCOR1_DROME / P40807: Ornithine decarboxylase 1; ODC; EC 4.1.1.17 from Drosophila melanogaster

26% id,
83% cov

A0A1E1IR91: ornithine decarboxylase (EC 4.1.1.17) from Leishmania guyanensis

29% id,
38% cov

BPHYT_RS00645: diaminopimelate decarboxylase
is similar to:
PaperBLAST

DCOR_HUMAN / P11926: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Homo sapiens
ODC1 / P11926: ornithine decarboxylase subunit (EC 4.1.1.17) from Homo sapiens
P11926: ornithine decarboxylase (EC 4.1.1.17) from Homo sapiens

25% id,
80% cov

W5Q1G7: ornithine decarboxylase (EC 4.1.1.17) from Ovis aries

25% id,
80% cov

P09057: ornithine decarboxylase (EC 4.1.1.17) from Rattus norvegicus

25% id,
80% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

152716-154110 (frame -1) on NC_010681
is similar to:
PaperBLAST

C9W982: ornithine decarboxylase (EC 4.1.1.17) from Grateloupia imbricata

33% id,
77% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory