Curated BLAST for Genomes

 

Curated BLAST

Searching in Burkholderia phytofirmans PsJN (BFirm)

Found 53 curated entries in PaperBLAST's database that match '4.1.1.19' as complete word(s).

These curated entries have 37 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Burkholderia phytofirmans PsJN, or try another query

BPHYT_RS04980: lysine decarboxylase
is similar to:
PaperBLAST

E8X9U7: arginine decarboxylase (EC 4.1.1.19) from Salmonella enterica

37% id,
100% cov

ADIA_ECOLI / P28629: Biodegradative arginine decarboxylase; ADC; EC 4.1.1.19 from Escherichia coli
AdiA / b4117: arginine decarboxylase, degradative (EC 4.1.1.19) from Escherichia coli
adiA / GI|145339: biodegradative arginine decarboxylase; EC 4.1.1.19 from Escherichia coli
adiA / P28629: arginine decarboxylase, degradative (EC 4.1.1.19) from Escherichia coli
P28629: arginine decarboxylase (EC 4.1.1.19) from Escherichia coli

37% id,
100% cov

Q5NT93: arginine decarboxylase (EC 4.1.1.19) from Selenomonas ruminantium

23% id,
60% cov

More...

BPHYT_RS17930: diaminopimelate decarboxylase
is similar to:
PaperBLAST

MADC2 / Q9M618: arginine decarboxylase (EC 4.1.1.19) from Brassica juncea

28% id,
51% cov

ADC / P49726: arginine decarboxylase (EC 4.1.1.19) from Solanum lycopersicum

25% id,
50% cov

SPEA_ECOLI / P21170: Biosynthetic arginine decarboxylase; ADC; EC 4.1.1.19 from Escherichia coli
SpeA / b2938: arginine decarboxylase, biosynthetic (EC 4.1.1.19) from Escherichia coli
speA / P21170: biosynthetic arginine decarboxylase (EC 4.1.1.19) from Escherichia coli
P21170: arginine decarboxylase (EC 4.1.1.19) from Escherichia coli

24% id,
45% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory