Curated BLAST for Genomes

 

Curated BLAST

Searching in Burkholderia phytofirmans PsJN (BFirm)

Found 27 curated entries in PaperBLAST's database that match '4.1.1.20' as complete word(s).

These curated entries have 17 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Burkholderia phytofirmans PsJN, or try another query

BPHYT_RS35090: diaminopimelate decarboxylase
is similar to:
PaperBLAST

DCDA_ECOLI / P00861: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Escherichia coli
DCDA_ECOLW / E0IWI3: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Escherichia coli
LysA / b2838: diaminopimelate decarboxylase (EC 4.1.1.20) from Escherichia coli
lysA / P00861: diaminopimelate decarboxylase (EC 4.1.1.20) from Escherichia coli
P00861: diaminopimelate decarboxylase (EC 4.1.1.20) from Escherichia coli

63% id,
96% cov

DCDA_THEMA / Q9X1K5: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Thermotoga maritima

34% id,
97% cov

DCDA_HELPX / B4XMC6: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Helicobacter pylori

33% id,
97% cov

More...

BPHYT_RS17930: diaminopimelate decarboxylase
is similar to:
PaperBLAST

Q9KVL7: diaminopimelate decarboxylase (EC 4.1.1.20) from Vibrio cholerae

58% id,
99% cov

Ga0059261_2051: diaminopimelate decarboxylase (EC 4.1.1.20) from Sphingomonas koreensis

47% id,
98% cov

BT1374: diaminopimelate decarboxylase (EC 4.1.1.20) from Bacteroides thetaiotaomicron

42% id,
97% cov

More...

BPHYT_RS00645: diaminopimelate decarboxylase
is similar to:
PaperBLAST

DCDA_THEMA / Q9X1K5: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Thermotoga maritima

29% id,
93% cov

DCDA_HELPX / B4XMC6: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Helicobacter pylori

30% id,
90% cov

P56129: diaminopimelate decarboxylase (EC 4.1.1.20) from Helicobacter pylori

29% id,
90% cov

More...

BPHYT_RS12410: aspartate kinase
is similar to:
PaperBLAST

N515DRAFT_4002: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica

28% id,
45% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory